Colius striatus (speckled mousebird): 104549160
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Entry
104549160 CDS
T08355
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csti
Colius striatus (speckled mousebird)
Pathway
csti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104549160 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csti03019
]
104549160 (SKIV2L2)
03041 Spliceosome [BR:
csti03041
]
104549160 (SKIV2L2)
03009 Ribosome biogenesis [BR:
csti03009
]
104549160 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
csti03016
]
104549160 (SKIV2L2)
Enzymes [BR:
csti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104549160 (SKIV2L2)
Messenger RNA biogenesis [BR:
csti03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104549160 (SKIV2L2)
Spliceosome [BR:
csti03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104549160 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
104549160 (SKIV2L2)
Ribosome biogenesis [BR:
csti03009
]
Eukaryotic type
Pre-60S particles
Helicases
104549160 (SKIV2L2)
Transfer RNA biogenesis [BR:
csti03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104549160 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
MTR4-like_stalk
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
104549160
NCBI-ProteinID:
XP_010208111
LinkDB
All DBs
Position
Unknown
AA seq
673 aa
AA seq
DB search
MADAFGDELFSVFEDAAASGAKKSKAGATENAKRPGKRLEEKSPKPVTGKTKREAEVNST
EDTILGKKPKLEDVLSEDANLADLMPQVKVQAVETVEGCTHEVALPAEEDFTGLKPRTGK
AAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIF
DEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDY
RPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGP
SNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCL
SDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINM
PARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQL
LKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNLEAQ
YNKIAIPNEENMVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEDDDFGW
GVVVNFSKKSNVK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgctttcggggatgagctcttcagcgtgtttgaggacgcggccgcctccggc
gccaagaagagcaaagcaggcgctacggagaacgccaagagaccaggaaaacgtttggag
gagaagtctccaaagcctgtgacagggaagacgaaaagggaagctgaggtcaatagtact
gaagatactattttaggaaaaaagccaaaattggaagatgttctttcagaagatgctaat
ctggcagacctgatgcctcaagtaaaggtgcaagctgtggaaaccgtggaagggtgtaca
catgaggttgcacttccagcagaggaagacttcacaggcttgaagccaagaactggaaaa
gctgcaaaagaatatccgtttattcttgatgcttttcagagagaagctattctttgtgta
gataataaccaatctgtattggtttcagctcatacttcagctggtaaaactgtttgtgca
gagtatgcaattgccctagctttgagggagaaacaacgtgtgatatttacaagtccaatt
aaagctctgagtaatcagaagtatcgtgagatgtatgaagaatttcaagatgttggtttg
atgactggggatgttactatcaatcctacagcttcttgtctggtaatgacaactgagatt
ttgagaagtatgctctacagaggctctgaagttatgcgagaagttgcatgggttattttt
gatgaaatccactacatgagagattcggaacgtggtgtggtttgggaagagacaattatt
ttgctccctgacaatgttcattatgtgtttctttctgcaactattccaaatgcccgtcag
tttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttatactgactat
cgacccactccactgcagcactatatattcccagcaggaggtgatggacttcacctagtt
gttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaagtacttaga
gatgcaggagacttggcaaaaggggaccagaaaggcaggaaaggaggaacaaaaggtcct
tcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaacctgtgattatt
ttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaagttagatttc
aatacagatgaagaaaaaaagatggttgaagaagtgttcaataatgcgatcgattgtctg
tcagatgaagacaaaaagcttcctcaggttgagcatgtacttcctcttctgaagcgagga
attggtatccatcatggtggtctgcttcctattttgaaagaaaccatagaaattcttttc
tctgagggcctaataaaggccttatttgcaacagagacttttgctatgggaattaatatg
ccagccaggactgtgctgtttacgagtgccagcaaatttgatggaaaagatttccgatgg
atatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggtatggatgac
agaggaatagtaattcttatggtggatgaaaaaatgagtccaacgattggcaagcagctc
ttaaagggttcagctgatcctttgaacagtgcatttcacctgacatacaacatggtattg
aacttgcttcgggtagaagaaattaaccctgaatacatgttagaaaaatccttctatcag
ttccaacattacagaactattccagaaatagtagaaagagtgaataatttggaagcacag
tacaataagatagcaattcccaatgaagaaaatatggtcatatactacaaaatccgccag
cagcttgcaaaactgggtaaagagattgaggaatatattcacaaaccaaagtattgcctg
ccctttctacagccaggaagactggtgaaggtgaagaatgaagatgatgactttggatgg
ggagtggttgttaatttctctaagaaatcgaatgttaag
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