Colius striatus (speckled mousebird): 104549666
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Entry
104549666 CDS
T08355
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
csti
Colius striatus (speckled mousebird)
Pathway
csti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104549666 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csti03019
]
104549666 (PNLDC1)
Enzymes [BR:
csti01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104549666 (PNLDC1)
Messenger RNA biogenesis [BR:
csti03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104549666 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
104549666
NCBI-ProteinID:
XP_010205285
LinkDB
All DBs
Position
Unknown
AA seq
502 aa
AA seq
DB search
MEFTGLHSTLPQNNRLSLFDSPVERYLKARQSVQQFTVTQLGLAIFSNENSNKYVVHSYN
FFLFPSTLGVTDVEFTLSASSIQFLSRYGFDYNKFLKDGIPYMNEVQEETLRQQLLAGNW
RISSGLDRNVLKKAIDEVTCWIATAEEEETMVLQDLNGHQMFEVQLVLRQALQNVWTQPL
EDKKVMVKKVSPRHRWLLEDSPDDSCQKELILLSARGFTNLFQTLVEAKKPLVGHNMLMD
LMHLHDKFYKPLPESYEEFKRNIHNLFPVLIDTKTVTKSIWKRYSFPRVFNLLEIHEVLC
SSKLNPKDATCPVIALASDCLRYAEKKSPHEAGYDAFLSGSVLLKSAHLLLHGSTDDAVE
ADPSFSRYLTALAEYLNKVNFIRGAASSVNFSGEDAPYQHLPALVVRVRGQPGLNEGQIY
QEFEALCRFDVRRLSENQFLLLSNKLKYVRLVLQDYKHHPRLQVSLYRHWRDSPRVSCLL
QVSGIVALWSLLTFVLGGAPCC
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggagtttactggcttacattcaactcttccacaaaataacaggctcagcctgtttgat
tcccccgtggagcggtacctgaaagccaggcagagcgttcagcagttcactgttactcag
cttggactggcaatattctcaaatgaaaattcaaacaagtatgtggtacattcgtacaac
ttttttctctttccctcaacactgggagttacggatgtcgagttcaccctttctgcatct
agcattcagttcctgtctcgttatggctttgactataataagttcctcaaagatggaatc
ccatacatgaatgaggtacaggaggagacccttcgccagcagctcttagcgggtaactgg
agaatcagcagtggcctggacaggaatgtgctgaagaaggctattgatgaagtgacctgt
tggatagctacagcagaagaggaggagactatggttctgcaggatctgaatggccatcag
atgtttgaagttcagctggttctgagacaggctctccaaaatgtttggacacagcctctt
gaagacaagaaggtaatggtgaaaaaagtgagtccacggcatcgttggcttctggaggac
tctcctgatgactcttgccagaaggagctcattctcctgtctgcccggggcttcaccaac
ctcttccagacacttgttgaagccaagaagcccctggtgggacacaacatgcttatggat
ctcatgcatcttcacgataagttctacaagcctcttccagaaagctatgaggagtttaaa
aggaacattcacaatctgtttcctgtcctcatagacaccaagactgtaacaaaatccatc
tggaagaggtattcttttcctcgagtatttaatcttttggagatacatgaggttttgtgc
agcagcaagctgaaccccaaggatgcaacgtgcccagtgatagctcttgcaagtgactgc
ttgagatatgctgagaagaaatctcctcacgaggcaggctatgatgcatttctcagtggt
tcagttcttctgaagtcagctcatttgctgctgcatggatccacagatgatgcagtggag
gctgatccttctttctctcggtatctcactgcgttagctgagtatctgaacaaagtgaat
ttcatccgaggtgccgcttcgagcgttaatttttctggggaagatgctccctaccagcat
ctgcctgccttggttgtccgtgtccgaggccagccagggctgaatgaagggcagatttac
caagagtttgaagctctttgtcgctttgatgtcaggcggctttcagagaaccagttcctg
ctgctctccaataaattaaagtacgtgaggctcgttctgcaagattataagcatcaccct
cgcctgcaggtttccctctatcgccactggagggactcgccccgcgtgagctgcctgctg
caagtctcaggtattgtggcactgtggtctctcctcacctttgtactcggaggagctcct
tgctgttga
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