Colius striatus (speckled mousebird): 104550366
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Entry
104550366 CDS
T08355
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
csti
Colius striatus (speckled mousebird)
Pathway
csti03015
mRNA surveillance pathway
csti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csti00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104550366 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
104550366 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csti03019
]
104550366 (PABPC1)
03041 Spliceosome [BR:
csti03041
]
104550366 (PABPC1)
Messenger RNA biogenesis [BR:
csti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104550366 (PABPC1)
mRNA cycle factors
Stress granule specific factors
104550366 (PABPC1)
Spliceosome [BR:
csti03041
]
Complex C
Other components
Complex C specific factors
104550366 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_10
RRM_occluded
RRM_7
RBD_RDR6
RRM_3
YflT
POP1_C
Motif
Other DBs
NCBI-GeneID:
104550366
NCBI-ProteinID:
XP_010205277
LinkDB
All DBs
Position
Unknown
AA seq
566 aa
AA seq
DB search
MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV
CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT
NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM
NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR
KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK
EERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQL
ARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTM
GPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASML
ASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEA
VAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgatgtcattaaaggcaaaccagtgcgcatcatgtggtctcagcgcgatcca
tctctacgcaaaagtggcgtaggaaatatcttcatcaaaaacttggacaaatcaattgat
aacaaagctttgtatgacacgttttctgcttttggaaacatcctgtcttgtaaggtggta
tgtgatgaaaatggatccaagggttatggatttgtacattttgagacacaagaagctgca
gaaagagctattgaaaaaatgaatggtatgctgcttaatgaccgcaaagtatttgttgga
aggtttaaatcccgcaaggaacgtgaggcagagcttggagccagagcaaaggaattcacc
aatgtttacatcaagaattttggagaagacatggatgatgagagacttaaggaactcttt
ggcaagtttggtcctgccttaagtgtgaaagttatgactgatgagagtggaaaatccaaa
ggctttggcttcgttagttttgaaagacatgaagatgcccaaaaagctgtagatgagatg
aatgggaaagagctcaatgggaaacaaatctatgttggccgagctcagaaaaaggtggaa
agacagacggagctgaagcgcaagtttgaacaaatgaagcaggacaggatcaccagatac
cagggagtaaacctttatgtgaaaaatcttgatgatgggattgatgatgagcgtcttcga
aaagaattctcaccatttggtacaatcactagtgcaaaggtcatgatggaaggtggccgc
agcaaaggatttggatttgtatgcttttcctcaccggaagaagccaccaaagctgtcaca
gaaatgaatggtagaattgtggctactaaaccattatatgtagctctagcccagcgtaaa
gaagaacgccaagctcatctcaccaaccagtatatgcagaggatggcaagtgtaagagca
gtacctaatcctgtaatcaacccgtaccaaccagcacctccttcaggttacttcatggca
gctatcccacagactcagaaccgtgctgcatactatcctactaatcaactcgctcaactt
gctagacctagtcctcgctggactgctcagggtgccagacctcatccattccaaaacatg
cctggtgctatccgcccagcagcacccagaccaccatttagtaccatgagaccagcttct
tcacaagttccacgagtcatgtcaacacaacgtgttgctaatacgtcaacacaaacaatg
ggtccacgtcctgcagcagcagccactgcagctactcctgctgtacgcacagtaccgcaa
tacaagtacgctgcaggtgttcgcaatcctcagcaacatcttaatacacagccacaggtt
gctatgcagcagcctgctgtccatgtgcaaggtcaggaacccttgactgcttccatgctg
gcttctgcccctccacaagaacaaaagcagatgttaggtgaacgtctatttcccctcatt
caaagcatgcaccctactctggcgggtaagatcactgggatgttgttggagattgacaac
tctgaactcctccacatgctcgagtctcctgagtctcttcgttcaaaggttgatgaagct
gtagccgtactacaagcccaccaagctaaagaggctgctcaaaaggcagttaataatccc
actggggttccaagtgtttaa
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