Colius striatus (speckled mousebird): 104550375
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Entry
104550375 CDS
T08355
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
csti
Colius striatus (speckled mousebird)
Pathway
csti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104550375 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csti03041
]
104550375 (SF3B1)
03036 Chromosome and associated proteins [BR:
csti03036
]
104550375 (SF3B1)
Spliceosome [BR:
csti03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104550375 (SF3B1)
Complex B
104550375 (SF3B1)
Complex C
U2 SnRNP specific factors
104550375 (SF3B1)
Chromosome and associated proteins [BR:
csti03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104550375 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
104550375
NCBI-ProteinID:
XP_010196092
LinkDB
All DBs
Position
Unknown
AA seq
1353 aa
AA seq
DB search
MLISTSPKVHSWASPRLCLPIFAHSSPPPRPRSPSGARVERSPGLQQTSHCTPPQFRCDS
VNIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDD
DYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKKHRRMMIIS
PERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAS
QPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPG
SKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWA
ETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPT
PGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKL
TATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEE
QKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHL
LVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMIS
TMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQI
AILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPL
WKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKV
VKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIIS
RIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVML
NGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLM
GHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKV
QENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH
DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSL
SFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHL
LNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNS
IYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcagcacttccccgaaagtccattcgtgggcttcccctcgcctctgcctcccg
atctttgcacatagctccccgcccccgcggccccggtcaccgtctggcgctcgcgtcgag
cgctccccaggccttcagcaaacatcacactgtactcctccgcagtttcgctgcgacagt
gtcaatattgaagcacaaattcgagaaattcaaggaaaaaagcctgctcttgatgaagca
caaggagtaggccttgattccacaggatattacgatcaagaaatctatggtggcagtgac
agcaggtttgctggatatgtcacttctattgcagcaactgagttggaagatgatgatgat
gactacccttctacaagtttgcttggccagaagaagcctggttaccatgctccagtggca
ttgcttaatgacataccacagtctactgaacagtacgatccttttgcagaacatcgtcct
caaaagattgcagatcgtgaagatgagtacaaaaagcataggcggatgatgataatttcc
ccagagcgtcttgatccttttgcagatggagggaagacaccagatcctaaaatgaatgcc
aggacatacatggatgttatgcgtgagcagcatttaacaaaagaagagagagaaattagg
caacaactagctgaaaaagctaaagctggagagcttaaagttgtcaacggagctgcatct
cagccaccttcaaaacgcaaacggcgttgggatcagacagctgatcagactcctggtgct
acacctaaaaaattatccagttgggatcaagcagagactcctggacatacaccatctctg
cgatgggatgaaactccaggtcgtgcaaagggcagtgaaactcctggtgctaccccaggc
tccaagatatgggatccaactcccagtcacacaccagcaggagctgcaacacccggacgg
gacaccccggggcatgccacaccaggccatggaggtgccacttccagtgcacgcaaaaat
cgatgggatgaaacacctaaaacagaaagagatactccgggacatggcagtggatgggct
gagacgcctcgtacagatagaggtggtgactccattggtgaaacaccaacaccaggagca
agtaagagaaagtcacgatgggatgaaacacctgccagccaaatgggtggcagcactcct
gttctgacacctggcaagacacccattggtacaccagctatgaacatggcaacccctaca
ccaggtcatataatgagcatgactcctgaacaactgcaggcttggcgttgggagagggaa
attgatgagagaaacagaccactttctgatgaagaattagatgctatgtttccagaagga
tataaggttcttcccccaccagctggttacgtacctattcgcactccagctcgcaagctg
acagcaactccaacacctttgggtggtatgactggattccacatgcagactgaagaccgg
actatgaagagcgttaatgaccaaccatctggcaatcttccattcctaaaaccagatgat
atccaatactttgataaactgctggttgatgttgatgaatcaactttaagtccagaagaa
cagaaggagagaaaaataatgaagttacttctgaaaataaagaacggcacacctcctatg
agaaaggctgcgttgcgacaaattactgataaagctcgggaatttggagcagggccgttg
tttaatcagattctgcctctgctgatgtcaccaacacttgaagatcaggaacgtcacttg
cttgtcaaagtcattgacagaattctttacaagctagatgacttggtccgaccatacgta
cacaagatccttgttgtcattgaaccactgctgattgatgaagactactatgctagagtg
gaaggcagagaaattatttcaaacttggctaaggctgctggtttggcaacaatgatctcc
accatgcgacctgatattgacaatatggatgaatatgtccgaaatacaacagctcgagcc
tttgctgttgttgcctctgctttgggcattccttctctgttacccttcttgaaagctgtc
tgtaaaagcaaaaaatcctggcaggctaggcatactggcatcaagatcgtacagcagatt
gctattcttatgggttgtgctatcttgcctcatctcaggagcttggttgaaattattgag
catggtctggtggatgagcagcagaaggttcgcacaatcagtgctttggctattgctgct
ttggctgaggcagctactccctatggtattgagtcatttgattctgttctgaagccttta
tggaagggtatacgtcaacacagaggaaagggtttggctgcgtttttgaaggctattggt
tacctgattccactcatggatgctgaatatgcaaactattataccagagaagtcatgcta
atccttatcagagagttccagtctcctgatgaagagatgaaaaaaattgtgttgaaggtg
gtaaagcagtgttgtggtacggatggtgttgaagcaaattacatcaaaacagaaatctta
ccaccttttttcaaacacttctggcaacatagaatggcattggacagaagaaactacaga
cagttggttgatacaactgtggagctggcaaataaagttggagcagcagaaattatttct
agaattgtggatgatctgaaagatgaggccgaacagtacagaaaaatggtcatggaaaca
attgagaagataatgggaaatctgggagcagcagatattgatcataaactggaagaacaa
cttattgatggcatcttgtatgcctttcaggaacagaccacagaggattctgtgatgctg
aatggttttggcacagtggttaatgctctaggcaagagagttaaaccctacttgccacaa
atctgtggtacagttttgtggcgtttgaacaacaaatcagctaaagttaggcagcaggct
gctgacctgatttctcgtaccgcagttgtcatgaagacttgtcaagaggaaaaactgatg
ggacacttgggtgttgtgctgtatgagtacctgggtgaagaatatcctgaagtactgggc
agcatactcggtgcacttaaggctattgtgaatgttataggtatgcacaagatgacacca
ccaatcaaagatctgctgccacgacttacacctattttgaagaacagacatgagaaagta
caggaaaattgtatcgatcttgttgggcgcattgcagaccgaggtgcagaatatgtttct
gcaagagagtggatgaggatctgctttgaactgcttgaattattaaaagctcataagaaa
gctatccgaagagccacagtgaacacttttggttatattgcaaaagccattggacctcat
gatgtattggccacgttgctaaataacttgaaagtgcaggaaaggcagaacagagtatgt
actacagtagcaattgctattgtagctgaaacatgctcacctttcacagtgcttcctgca
ctcatgaatgaatacagagttccagaactgaatgtccagaatggtgtgttaaaatctctt
tctttcctgtttgaatacattggagagatgggaaaggattacatttatgctgttacacca
ttgcttgaagatgctttaatggacagggatcttgtacacagacaaacagccagtgccgtg
gtgcaacacatgtctcttggtgtttatgggtttggctgtgaagattctcttaatcatttg
ttaaactatgtatggcctaatgtgtttgaaacctctcctcatgtcattcaggcagttatg
ggggctctggagggcctcagagttgctattggtccctgcagaatgttacagtattgttta
cagggtttgtttcaccctgccagaaaagtcagagacgtttattggaagatctataattca
atctacatcggatcacaggatgctctgatagcacattatccaagaatctataatgatgat
aagaacacctatattcgttatgaactcgattacatcttataa
DBGET
integrated database retrieval system
