Colius striatus (speckled mousebird): 104553641
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Entry
104553641 CDS
T08355
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
csti
Colius striatus (speckled mousebird)
Pathway
csti03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csti00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104553641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csti03019
]
104553641
Messenger RNA biogenesis [BR:
csti03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104553641
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Collagen
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_DCAF4
eIF2A
Motif
Other DBs
NCBI-GeneID:
104553641
NCBI-ProteinID:
XP_010194663
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MNICFFALLPGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTV
MEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGG
SDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKM
RDRYNLNLLPGMSEDGVEYAPGDDLEPNSLAVIPGMGIPEQLKIAMEQEQMGKDDSNDIE
MTIPGLDWGMEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPLPPPPEPLNDRKED
IKLEEKKKTQAEIEQEMAALQYTNPQLLEQLKIERLAQKQAEQVQPPPGGSLHGPQPFPG
QGPMSQMPQGFQQPLPPQQMPMNMPQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGAGPQ
GFMGPQGPPGPQGPPQGMPRPQDLHGHQGMQRHPGPHGPMGPPGPQGSAGPQGHLGPQGL
PGSQTHLGPQGPPGPQGHLGPQGPPGQGMQGPPGPRGMQGPLPHGMQGAPGSQGMQGPIS
QGPLMGLNPRGMQGPPGPRDSQGPNPQGMMMGHPQEMRGPHMQSGLLGHGPQEMRGLQGP
PPQGTMLGPPQEMRGPPGPQGQQGPPQGSLVGPQGNMQGPQGQPNPSRGPHPSQGPLPFQ
QQKTPLLGDGPRAPFNQDGQNPGPPPLIPGLGQQGGQGRLGPHNQGPGLNKGDSRGPPNH
HMGPLSDRRHDQNSGGPDHGPERGLFRGGQEWGDGRDSRGMPDRRGPHPDFHDDFDRPDD
FRDDFHPDKRFGHRLREFEGRGGPPLQDEKWRRGGPGPPFPPDHREFEGGGSNRGPPGAW
EGRRPADDRYPRDPEDARFRGRRDESFRRGGPSRHEGRGPRGRDGFPGPEDFGPDDTFDS
PEENSRGRDHGVRGRGRGALRGGRKGLLPTPDEFPRFEGGRKPDSWDGNREPGPRADHPP
HDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSDHRDMDAPGGPPEERGKGRGNSG
PSQRASKSGRSSSLDGDHHDGFHRDEGFGGGPSGGNNPSRGGRSGSNWGRGNNMNSGQSR
RGGSRGGGRGR
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgaacatctgtttttttgctcttcttccaggacatggagcagatgtgaaatgtgttgac
tggcatccaacaaagggattagttgtgtcaggaagtaaagatagccaacagcccatcaag
ttctgggatccaaagactggccagagccttgctacactacacgcacataaaaacacagtg
atggaggtgaaactgaatctgaatggcaactggctgctgacagcttctcgtgaccacctc
tgcaagctctttgacattcgtaatctgaaagaagaacttcaggtcttcaggggtcataag
aaggaggccacagctgtggcctggcatcctgttcacgaagggctgtttgccagtggagga
tctgatggctccttgttgttctggcacgttggggtggagaaggaggttggtggaatggaa
atggcccatgagggaatgatctggagtctggcgtggcaccccctgggacacattctctgt
tcgggctcaaacgaccacaccagcaagttttggactaggaatcggcctggagataaaatg
cgagatcgttacaacttgaatctgctgcctgggatgtcagaggacggtgtggaatatgct
ccgggagatgatctggaacccaacagcctagcagttattcctgggatgggaatacctgaa
caactgaaaatagccatggagcaagagcagatggggaaagatgactccaatgatattgaa
atgacaatcccaggactggactggggaatggaggaagtaatgcaaaaggaccaaaagaaa
gtgccacagaagaaagtgccctatgcaaaaccaataccagcacagtttcagcaggcatgg
atgcagaataaagtccctttgcctcccccacccgagccactgaatgacagaaaggaagat
attaagctagaagagaaaaagaagacgcaggcagagattgagcaggaaatggcagcactt
cagtacacaaacccgcagctcctggagcaattgaagattgagagacttgcccaaaagcaa
gctgagcaagtgcagccacctccaggaggatctcttcatggaccccagccgtttccaggg
caaggcccaatgtcacagatgcctcaaggatttcagcagccccttccgcctcagcagatg
ccaatgaacatgcctcagatgggacctcctggtccgcaaggacagttcagacctccagga
ccccaaggacagatgggaccccaaggtcctccgttacaccagggaggtgcaggtccacag
gggttcatgggaccacaaggacctccgggcccccaagggcctccacaaggaatgccacgg
cctcaggatttgcacggacatcaaggaatgcagagacatcccggccctcacggcccgatg
gggcctccgggcccgcagggtagcgctggcccacaaggccacttgggaccgcagggtctg
cccgggtctcagactcacctgggaccgcagggtccacctggccctcaagggcacttgggt
cctcaaggtccccctggccaagggatgcaagggccacccggtccccgaggaatgcaagga
cctcttcctcatggcatgcaaggagctccaggatctcaagggatgcagggccctatatct
caagggcctctgatgggacttaatccaagagggatgcagggtccaccgggacccagagat
agccagggacctaatccacaagggatgatgatgggtcatccgcaagaaatgagaggtcct
catatgcaaagtggtttactaggacacggtccccaggagatgaggggcctccagggaccc
ccacctcaagggacaatgttaggaccgccacaggagatgcgtgggccgccgggtcctcaa
ggccagcagggacctccgcaaggctccttagtggggcctcaaggaaacatgcaaggacct
cagggacagccgaacccttcgcgggggccgcacccttcgcagggccctctgcccttccag
cagcagaaaacgcctctgctgggcgacgggccgcgcgccccgttcaaccaggacggccag
aacccaggtcccccaccactgataccaggactggggcagcagggaggacaaggtcgtctt
ggccctcacaaccaaggacctggtcttaacaaaggtgactcccgtggtccaccaaaccat
cacatgggccctctctcagatagaaggcacgaccagaacagtggtggtcctgaccacggg
cctgagcgagggttgtttcgaggtggccaggagtggggtgatggtagagacagcaggggc
atgccagatagacgaggacctcacccagatttccatgatgactttgatcgaccagatgac
ttccgcgacgacttccatccagataagagatttggccatcggttgcgggagtttgagggg
agaggaggcccaccgctgcaagacgagaagtggaggcgaggtggacctgggccgcccttc
cctcccgatcacagggaatttgaaggagggggctccaaccgcgggcctcccggtgcttgg
gaaggacggagacctgcggatgacagatacccacgggatcccgaggacgcacgcttccgg
ggaaggcgggatgagagcttcagaagaggaggaccctcgagacatgagggccggggaccc
aggggcagagatggcttccctggccctgaagattttgggccagatgacacttttgactct
ccagaagaaaactccagaggaagggaccatggtgttcgggggcgaggtcgtggtgctctc
agaggaggccggaagggtttacttcccactccagatgaatttccacgctttgaaggagga
cggaaaccagactcctgggacggaaacagagagccaggtcctcgtgcagatcaccctcct
cacgacgggcattccccagccagcagggaacgttcctcttcgctccagggcatggacatg
gcctcactgccaccacgcaaacggccctggcacgatggaccggggacctctgaccacaga
gacatggatgctccagggggacctccagaggagaggggcaaaggacgaggaaattcggga
ccttcacagagagcgtcaaaatctgggaggtccagttctttagatggagaccaccacgat
ggattccacagggatgaaggttttggtggaggcccttcaggaggcaataacccttctcga
ggaggaaggagtggaagtaattggggacgaggaaataacatgaactcgggtcagtcaaga
agaggaggatctaggggtggcggaagaggccggtag
DBGET
integrated database retrieval system
