Colius striatus (speckled mousebird): 104560578 Help Entry 104560578         CDS       T08355                                  Symbol SETX Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism csti  Colius striatus (speckled mousebird) Brite KEGG Orthology (KO) [BR:csti00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:csti03021]     104560578 (SETX) Enzymes [BR:csti01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      104560578 (SETX)     5.6.2.5  RNA 5'-3' helicase      104560578 (SETX) Transcription machinery [BR:csti03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      104560578 (SETX) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_11 AAA_12 AAA_19 AAA_30 Viral_helicase1 UvrD-helicase AAA_22 SLFN-g3_helicase AAA_16 ResIII UvrD_C_2 RNA_helicase SAS4 nSTAND3 Motif Other DBs NCBI-GeneID:  104560578 NCBI-ProteinID:  XP_010204275 LinkDB All DBs Position Unknown AA seq 2814 aa AA seqDB search MSTCRWCTPSGSDTTDFLKSYASKRLSPDDLEGSNDDLCYCLECVVEYHKAREKLPGLHE ILWKLETSRLVAHIEKSMGEDAGEDDELFIVNENGETPLSGYVGPDFENNLRVPLLEILK YPYLLLHEKVSELCVEVLCRMEQSHNSFQVFEKCPGIYLFLVHPNEAVRRWAILTARNLG KVDRDDYYDLQEVLTCLFKVIELGLFESPDIYSYSMIEEGKLILLPSHLYDNTNYKNYWL GICMLLTVLEEQAMESLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQ LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFKRTKSEPESDYDDDMITCSQIVYN FNTEKPQKNAGWKSDICPEYCPNMYEDMQTLANVLQCDIGRDMRVHHSTFLWFIPFVQSL MDLKDLGVAYIVEVIHYLCSEIKDILNERIQQCDKISEFFLMVLVSIVELHRNKKCLHLL WISSQEWVEAVVRCAKLPGIVFTRCTEKASGPCARGSSSISSQATNSVQHACVQLIRSLL REGYQSGQRALCKQYLDKLNLLLRGSLSLGWQLNIQETHELQLCLKHVIRSMKDRALSRS VPAGNNTSSTTSPVISVKQEKSVHDDGLKMSIQGRDGHGSSFAVMLKEGGGEDCQGNAFP QRRSAWEEECRDASNNSRSRTSTESPLVNIKKEPNDFTAQDCVYPQNSLATKVCGKVLEN RNNDVSVKGDLDNQCLNPTAQHSDLRKSGELESRCEAGSITPLHLPAQTCIGSPEHASSS DLKESNVSLSFSSKFKVDVHRLSNLKSKLQKTDLPLKILNPAKSGNLKNYSSTASPSKAG EQPEFCPGHLCTSKDCNKHQRVTTACENEASIDTPRHRESTREKSGFQSSLVPNKQVSKE MPQDCSNSSKNEPEVKENQDDSILLLDISDTLLRKVSTEEKSSSLLKSVFKKDTDMQTSD WGQPHLNDLAKYDSKSHISKAFCMDKTSTNGHVPSSSENQRDISNPAARLRTLSLKCESS DRLLEFSEYFKQENSSVRKKEADGTKMVSEDNTSTEFQVDGELSKLSPDARAKSLSFPCD SRQESSIQQNVCDIKRKVKGAVRSSENSQSIKLPSDMGCCNKQVIIISDSSDEEERVSDK VQTNQMNENVCPEKQPSTSSCRSDRDIKMESKSPSSPLAMEDCDSQYFEFETEDDVFSVW QDTQAYLMEETQEYKQGDMKQGDILTSVGSGNSDGPPDDHTNEWGYDMDYISDDIMEEAA NSLEEHAENVSHQKEADNTEVVTNSTLQESVSREDAKEQLENFADKCAVAKDFPLESKLA EPKASTSNISLASKLALKKNSTSPGKSTAKSKVARIAQRSPKKSPVCKPAQNKKLLQSTS KTSQPGRSLPAVVPPRKVRQHPAPASTAEKLGLKKAPRTAFELSQRSLESVAQLRSHGKA AGRVVAAQKQRAKLIAPQSLSVKHNKKLLACQDRQFFRQMRPQKGVRVKNTPGSCESRYK ARKVDTKSMKQRSKSFGLASVENQKEKTKEEAVGPSVSDRKFESCGEDEGYGSKMPSSSN SNRKSEDSSEVVSPVATVSSLSSTALAGSEKDEPSGRDCVAQLVCEKTASKEDECKSNGN SEDDDDLFLTQLDPVDMELCSEEESVQDTTTASEKPEEMDTGGSLQQNEPLTFVKCKNKD CTEKVEKPGECCSKHSATSSGADHLFAKPSLLPPKTRKPSTTKVFSSASSSRNAAFSKDL EDVRKPPPASKSKASAAKPVVVRPPNAKTVPTGSTMCRSPSVSNAPQHRVCGNILQSQNR QNTSMSTVSRRPPQETSYSSFLGAQHRDHSIFVSEVLKWTYDMFANFTQFGTPSHLQQSV VASVPVQFQGYNDYFDTFFPLMMLNSFETVAQDWIENQKVRERSYYFNLQNFSADLNTAN FTAHFRESDLAKQLHPKEDDLIFLVVQRTKDNFREENEMENHVVNHVGLVTRFSHASGRL AKQKEQYTVCHLSVQTRGNLAFFINKQVKCVVVGSLVTTRRKFKGLLLLSRSPLAKPVIS PSYSDFCPRDLLVASESAALDMKEYNEDQKRAIETAYAMVKQHPGLPKICLIHGPPGTGK SKTIVGLLSRVLRENTRNEKTTKRTHSKIKPNRFLVCAPSNAAVDELMKKIIVAFKEKCQ NKQEPLGNCGDITLVRLGAEKAINSEVRGFSLDKQVEHRMKRKPGDCDQDIEKRKAALDQ KLDMLSRQRAMHRFEKRESQMLDDEIGRLSRERQQLASQLKEVRGHSQKVQADIILESDI ICCTLSTSGGGLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPKQ LPPTVKSMKAQEYGYDQSLMARLHKHLEDQVQKNVLRSLPVVQLTVQYRMHPDICFFPSN YVYGRTLKTDKATEENRCSSEWPFQPYLIFDVGDGCEERDNDSFSNPQEVKLVLELMRTI KEKRKDLGFRRIGIITPYNAQKKRIQEQLDRVFRSSSPGEVDTVDAFQGREKDCIIVTCV RANSTIGFLASLQRLNVTITRARFSLFILGRLQTLMENKDWNELIQDAQKRGAIIKTTEK NYKKDAVKILKLKPTLQPPAKAGTKESALLQASSSKRGELAHPREASSPQQLTAGAAHAV PQGSRGPQQPQGALAAVARRGSASAAREAPALPTDQEKPRDPRLVSMAGRTETKGKEPAS KDSGHSTQSHTGSSHQGLNVSSAARDRVPRTEMPKRPQPTMGPHDATAASPYTARHEGDR RASLSKSSSRGHSEEGQSSSSKWNKEYHALTRRAPEEWPRNTDSNSAKRRKTSH NT seq 8445 nt NT seq  +upstreamnt  +downstreamnt atgagcacatgtcgatggtgtacacctagtggttctgacaccactgacttcctgaagagc tatgcttccaaacggttgtccccagatgatcttgaaggatccaacgatgatctctgttac tgcctggagtgtgtggttgaataccacaaagcaagggaaaagttgccagggttgcatgag attttgtggaaattggaaacctctcgtcttgttgcccacattgagaaatccatgggagaa gatgctggagaagatgatgagttgtttatagtgaatgagaatggagagacaccgctctct ggttatgtgggcccagattttgagaacaacctgcgagtaccccttctagaaatactgaaa tacccgtatctgctgctgcatgagaaagtcagtgagctgtgtgtggaagtgctctgtaga atggagcaaagtcacaactcctttcaggtctttgagaaatgtccaggaatttacctcttt ttggtacacccaaatgaagcagtccgtcgatgggccatcctaacagcaaggaatttaggg aaggttgacagggatgattactatgacttacaggaagtgctgacttgcttgttcaaagtt attgagttggggctttttgagagtccagatatttacagctattcaatgattgaagagggt aaactcatccttctgccatctcatttatatgataataccaactataagaactattggcta gggatttgtatgttgttgacagtgctggaagaacaagctatggagtccttgttattgggc ccagataaacaaaatgatttcatgcagtctatacttcacaccatggagaaagaagcagct gatgattccactgaccccttctggccagcgctgcattgtttcatggttattttggatcaa ctcggatctaaagtatggggtcagcttattgatcctgtccaagcctttcaaaccattatc aacagtgtgagctacaacaatgaaataaaaaatatacgcagtagctttaagaggacaaaa tctgaaccagagtcagactatgacgatgacatgatcacttgcagtcagattgtgtacaat ttcaacacagaaaagcctcaaaagaatgctggatggaagtctgacatttgtcccgaatac tgccccaacatgtatgaagatatgcaaacactggctaacgtgcttcagtgtgatataggc agagacatgcgcgtccatcacagcacgtttctgtggttcatcccatttgtgcagtcgctt atggatctcaaggacttgggtgtagcatatatagtagaggtcatccactacctttgctca gaaatcaaagatattctcaatgaaagaatccagcagtgtgacaaaatctctgaatttttt ctcatggtcttggtgtcgattgttgaactgcacagaaataaaaagtgcctgcatttgctg tggattagctcccaagaatgggtggaagcagtggtgagatgtgcaaagcttccaggtata gtctttacacggtgcactgaaaaagcatctggaccttgtgcgagaggttcatcatcaata tcttcacaagctactaactctgtgcagcatgcctgtgtgcagttgatacgcagccttctt agagagggctatcagtctgggcagcgtgctctttgcaagcaatacctagacaaactcaat cttcttctgcgaggcagtctgtctctaggttggcagctgaacatccaggaaactcatgaa ttacaactgtgtttgaagcatgttataagaagtatgaaggacagagcattgtctaggtct gtgcctgcaggaaacaatacaagctctacaacttcgcctgtcatttctgtaaagcaagag aagagtgtacatgatgatgggcttaagatgagtatacaaggcagagatggccatggttcg tcatttgctgtcatgttgaaggaaggtggaggtgaagattgtcaaggaaatgctttccct cagaggaggagtgcctgggaagaggaatgtagagatgcatctaacaattcaaggtctcgg acatccacagaaagtcctttggtgaatattaaaaaggaacctaatgatttcacagctcag gattgtgtctacccacagaactctttggcaacaaaagtatgtgggaaagttctggaaaat aggaacaatgatgtgtcagtgaaaggtgatttggataatcagtgtttgaatccaactgcc cagcattcagatctcagaaaaagcggagagctggaaagcagatgtgaagcaggatccata acaccactgcatctgcctgctcaaacttgtattggttctccagaacatgcttctagctca gatttaaaggaaagcaacgtgtctctcagtttctcttcaaagtttaaagtagatgtacat agactcagcaatttgaaaagcaaactgcagaaaactgatttgcccttaaaaatattgaac ccagcaaagtcaggcaacttgaaaaactacagttcaacagcaagtccttcaaaagcagga gagcaacctgagttttgccctggccatctgtgtacaagcaaagattgtaataaacatcag agagtcactactgcatgtgaaaatgaagcctctattgatactccaaggcatcgtgaaagt acacgggagaaaagtggttttcaatccagcctggtccccaataaacaagtatcaaaggaa atgccccaagattgctctaattcctctaaaaatgaacctgaagtgaaggaaaatcaagat gacagtattttgcttttagacatcagtgacaccttattgagaaaagtatccaccgaagaa aaatcgagttctttgttgaagtctgtgtttaagaaagacactgacatgcaaacttcagac tggggacagcctcacttaaatgacttggctaaatatgactctaaaagtcacatttcaaag gcattttgtatggataaaacttcaacaaatggtcatgttccatctagctctgaaaaccag agagatatatccaaccctgctgctcggctcaggacactgtcattgaagtgtgagtcgagt gacagattgttggaattttccgagtatttcaaacaagaaaacagttcagtaaggaagaaa gaggcagatggtacaaagatggtttctgaagataatacttcaacagaattccaggttgac ggagaactgagtaagttatctccagatgcacgtgctaaaagtctcagttttccctgtgat tcacgccaagaaagctcaatacagcagaatgtatgtgacattaaaaggaaagtgaaaggt gctgtaaggtcttctgagaatagccaaagtattaagcttccctctgatatgggttgttgt aacaaacaagtcattatcatttcagattcttctgatgaagaggaacgtgtgtcagacaaa gtgcaaacaaatcaaatgaatgaaaatgtgtgtcctgaaaagcagccatcaacttccagc tgccgttctgatcgtgatatcaaaatggaatcaaagagtccaagctctcccttggcaatg gaagactgtgattctcaatactttgaatttgaaacagaagatgatgtcttttcagtttgg caagatactcaagcataccttatggaagaaactcaggagtataaacaaggtgatatgaaa caaggtgatattttgacatcagttggtagtggcaattcagatggcccaccggatgatcac acaaatgagtggggctatgatatggattatataagtgatgatatcatggaagaagcagca aactcattagaagagcatgcagaaaatgtttctcatcagaaagaagctgataatacagaa gtggtgactaattcaacgttgcaagaatctgttagcagggaagatgcaaaagaacagctg gagaattttgcagacaaatgtgctgttgctaaagatttccccctcgaatcaaaattggct gaacccaaagcatctacatctaacatctcattagcttcaaagttggcccttaagaaaaat agcacaagcccaggtaagagcacagcaaaatcaaaggtggcaagaattgctcaaagaagc cctaaaaaatctcctgtttgtaaaccagcccaaaataaaaaactgcttcaaagtacgtcc aaaacctcacagcctggcaggtcgctccctgctgtggttcctccaaggaaggttcggcag caccctgcaccagcatcaactgcagaaaaacttggtctgaagaaggcgcctcgcacagcg tttgagttgtcccagcgctctttggagagcgtggcgcagttgcgcagccacggtaaagct gcaggaagggttgtagctgcacagaaacagagggctaaactaattgctcctcagagttta tctgtaaagcataacaaaaaattgctggcctgccaggaccgtcagttttttaggcagatg aggcctcaaaaaggtgtcagagtgaaaaatactccaggaagttgtgagagtagatacaaa gccagaaaagtggatacaaaatctatgaagcagaggtctaaaagttttggattggcatct gttgaaaaccaaaaagagaaaaccaaggaggaagctgttggtccctctgtcagtgacaga aaatttgagagctgtggggaggatgaggggtatggctctaaaatgccaagttcttcaaac tcaaacaggaaatcagaggacagcagtgaggtggtttctcctgttgctacggtttcaagt ctctcttccactgcacttgctggaagtgagaaagatgaaccttcaggaagagattgtgtt gcccagctggtgtgtgagaagacagcttcaaaagaagatgagtgtaaatcaaatggaaac agtgaagatgatgatgatctgtttttaactcagttagatcctgtggatatggagttatgt tctgaggaagaaagtgttcaagatactactacagctagtgaaaaaccagaggaaatggat actggtggaagcctccagcagaatgaacccttgacttttgtgaaatgtaagaacaaagac tgtacggaaaaagtggaaaaacctggagagtgctgtagtaagcattcagccactagctca ggagcagatcacttgtttgccaaaccttctctcctgccccctaaaaccagaaagccttcc actaccaaagttttcagctcagcaagttcttcacggaatgcagccttcagtaaggatctt gaagacgttcgaaagccacctccagcttcaaaaagcaaagcgagtgcagcaaaaccagtg gtggtcaggccaccaaatgcaaagactgtaccaacgggaagtacaatgtgcaggtctcca agtgtcagtaatgcccctcagcatcgtgtctgtggtaacattctccagtcacaaaataga cagaacaccagtatgtcgactgtttccagaaggcctccccaagaaacaagttattcttcc tttcttggtgctcagcaccgggatcatagtatttttgttagtgaagtcttaaagtggact tatgacatgtttgcaaacttcacccagtttggaactccaagtcatctgcagcagtctgtg gtagcctctgttcctgtccagttccaggggtacaatgactactttgatacgtttttcccc ttgatgatgctgaatagctttgaaacggtggcacaagactggatagaaaaccagaaagta agagagaggagttattacttcaacttacagaacttcagtgctgacttgaatacagcaaat tttacagctcattttcgagagagtgatttggcaaagcaacttcatccaaaggaggatgac ttgatcttcttggtggtccaaaggacaaaagacaattttagagaagaaaatgagatggaa aaccatgtagtgaatcatgttggtcttgtgacacggttttctcatgcatctggacgttta gctaaacaaaaggagcagtatactgtctgtcatctttctgttcaaactcgaggcaatttg gcattcttcataaataagcaagtgaagtgcgtggtggttggctccctggtcacaacacgt cgaaaattcaaaggtctgctactgttgagcaggagtcccctggctaaacccgtcatcagc ccaagctacagtgacttctgtcccagagatttgcttgtggcttcagaaagtgctgcactg gatatgaaagaatacaatgaagatcaaaagagagcaattgagacagcttatgccatggta aaacaacatccagggcttcccaagatctgccttatccatggaccacctggaacagggaaa tcaaaaactattgttgggcttttgtctcgtgttttgagagaaaacactaggaatgagaaa acaactaaaagaacacattccaagatcaagccaaaccgttttctggtttgtgcaccatca aatgctgctgttgatgagctgatgaaaaagatcatcgttgcatttaaggaaaaatgccag aacaaacaggaacctttgggaaactgtggtgatatcacattagtgagacttggtgctgaa aaagcaatcaacagtgaagtccgggggtttagcctggacaagcaagttgaacatagaatg aaacgaaaaccaggtgactgtgaccaggatattgagaagagaaaagcagctctggatcaa aagctggacatgctgtctcgtcaacgtgccatgcacagatttgagaagagagagagtcaa atgttagatgatgaaattggcagactttcaagggagagacaacagcttgcttctcaacta aaagaggttcggggtcactctcagaaagtacaggcagatatcatcttggagtccgacatc atctgctgcacgctgagcacgagcggcggtggtctgcttgaatcggctttttcgcggcaa ggacttgatcctttcagctgtgtcattgtggatgaggcagggcagtcctgtgaggtcgaa acgctgattccactgatccatcgctgtaataagctcgtccttgttggagatcccaaacaa ctccctcctactgtaaaatccatgaaggctcaggagtatggctatgatcagtccttgatg gcacgcctacacaagcacctggaggaccaagtgcagaagaatgttttacgaagcctgcca gttgtgcagctgactgtgcagtacaggatgcaccctgacatctgcttcttcccatccaat tatgtttatggcaggactctaaagacagacaaagcaacagaagagaacagatgttcttca gagtggccattccaaccctacctaatctttgatgtaggagacggttgtgaggagcgagac aatgactctttcagtaatcctcaggaagtgaaactggtgttggaattaatgagaacaatt aaagaaaaaaggaaggatcttggttttcgtcgcattggaataatcaccccttacaatgca cagaaaaagagaatccaggagcaactggacagggtgtttaggagtagcagtccaggagaa gttgacacagtggatgcgttccagggacgagagaaagactgcatcatagtgacatgtgtc cgggctaacagcactattgggtttctggcaagtcttcagcgtctgaacgttacaataacc cgagccaggttcagcctcttcatccttggaaggctgcagacgttgatggaaaacaaagac tggaatgaattgattcaggatgctcagaaaagaggtgctattatcaagacaacagaaaaa aactacaagaaagatgctgtgaagattttgaagctcaaaccaacactacagcccccagcc aaagcagggacaaaggaatctgctctgttacaggcttctagtagcaagagaggtgagctt gcccatccaagggaggccagtagcccgcagcagctgactgctggtgctgcccatgcagtg ccccaaggaagcagagggccccagcagccccagggggctctggctgcagttgccaggaga ggcagtgcctctgcagccagggaggctccagcacttcctactgatcaagagaaaccgagg gacccgaggctggtgagtatggccggtagaactgaaacaaaagggaaggagccggcctca aaagacagtggtcattcaacccagagccatacaggatcatcacatcaaggcctcaatgtg tcttcagctgccagggatcgtgttcccagaacagaaatgccaaagaggccccaaccaacg atgggaccacatgatgcaactgcggcgtcgccatacacggctcggcacgagggggacagg agagcttctctgtcaaaaagcagctccagaggccacagtgaggaaggtcaaagcagtagc agtaagtggaacaaggaatatcatgctctaacgaggagagcaccagaggaatggccacgg aacacagactcaaacagtgccaagcgaaggaagacctctcactga

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