Colius striatus (speckled mousebird): 104562107
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Entry
104562107 CDS
T08355
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
csti
Colius striatus (speckled mousebird)
Brite
KEGG Orthology (KO) [BR:
csti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csti03041
]
104562107 (YTHDC2)
Enzymes [BR:
csti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104562107 (YTHDC2)
Spliceosome [BR:
csti03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104562107 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
R3H
Helicase_C
DEAD
Ank_2
AAA_19
HA2_N
nSTAND3
Ank
ATPase
AAA_22
Ank_4
PhoH
AAA_23
AAA_16
AAA_7
SRP54
AAA_30
AAA_29
Motif
Other DBs
NCBI-GeneID:
104562107
NCBI-ProteinID:
XP_010206339
LinkDB
All DBs
Position
Unknown
AA seq
1400 aa
AA seq
DB search
KGLKDIRVDEEVEIAVNLALERFRYGDDKEMEFPSSFTSTERAFVHRLCQSLGLISKSKG
KGASRYLTVRKKDGSELTHSVMACYLALSTKHAIRSLIQRFPVTNKERTDLLPKTERGNA
FAVESENREVNKTSGRLSNGIPQVPAKRGESEFDSFRQSLPVFEKQEEIVKIIKDNRVVL
IVGETGSGKTTQIPQFLLDDCYKNGTPCRIFCTQPRRLAAVAVAERVAAERREKIGQTIG
YQIRLESRVSPKTLLTFCTNGILLRTLMTGDSTLSTVTHVIVDEVHERDRFSDFLLIKLR
DVLQKQTNLKLIISSAALDANLFIRYFGNCPVVHIQGRPFEVKEMFLEDILRSTGYTNKE
MVKYKKEKQREEKQQNTLTDWCSAQENNSKRESQRQSSVPSAAEEYNLLDDGSDTVFNQL
TEKDANSLEPWVIKEMDSCLSDIWLHKDTDSFAQVFHLILTENVSVDYRHSETSVTALMI
ASGRGFLSQVEQLISMGASINCKSSNGWMALDWAKQFGQTEVVDLLESYSASVESGNLDE
SSLVQTSGSDLSAEDRELLKAYHHSFDDEKVDLDLIMHLLYHICHNCGAGAILIFLPGYD
EIVSLRDRILFDDKRFADNAHRYQVFMLHSNMQTLDQKRVLKCPPAGIRKIILSTNIAET
SITVNDVIFVIDSGKMKEKSFDALSCVTMLKMVWISKASAIQRKGRAGRCQPGVCFRLFS
RLRFQNMLEFQTPELLRMPLQELCLHTKLLAPINCPIVDFLMKAPDPPPALIVRNAVQML
KTIDAMDPWEDLTELGYHLTELPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLP
TMASQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQKARSDGWERTFCEKNFLSQATMEII
IGMRTQLLGQLRASGFVRARGGADIRDVNTNSENWAVVKAALVAGMYPNLVHVDRENLVL
TAPKEKKVRFHPTSVLSQPQYKKIPPANGQAAAIQALPTDWLIYDEMTRTHRIANIRCCS
VVTPVTVSLFCGPARLPSNALQEPSSFRGDGLSNDNSDSEMEEKTSNLALLKLDEWLHIS
MDPEAAGLLLQLRQKWHSLFLRRIRAPSKPWSQVDETTIRAIIAVLSSEEQSAGLQQPSG
IGQRPRPMTSEEFPSASTWRSINNRKSSAETELSDDSSNAEKALMKSTPPPLHQSKKYKE
KNILHSKRTSDDRSDRSSVKSTDSSSYPSPCASPCSPLSGKGSKSPSPRPNMPVRYFIMK
SSNLQNIDISQQKGIWSTTPSNERKLNRAFWESRMVYLIFSVQGSGHFQGFARMASEIGC
EKSQDWGSAGLGGVFKVEWIRKESIPFQFAHHLLNPWNDNKKVQISRDGQELETQVGEQL
LQLWDHIPLAGKAQQIEYAK
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
aaggggctgaaggatatccgcgtcgacgaggaggtggagatcgcggtaaatctcgccctg
gagcggttccggtacggagacgataaagaaatggaattcccttcttctttcaccagtact
gaaagagcatttgttcaccggctctgtcagtctcttggactgatatctaagagtaaagga
aaaggagcaagtcgatatctgactgtaaggaagaaggatgggtcagagctaactcattca
gtaatggcttgttacttggctctcagtacaaaacatgccattcgtagtttaattcagaga
tttcctgtcacaaataaagaacgaacagaccttctaccaaagacagagcgaggaaatgca
tttgctgttgaatctgaaaacagagaagtaaacaagacaagtggacgacttagcaacggt
atcccccaggttccagcaaaaagaggggaatcagagtttgattccttcagacaatcacta
cctgtttttgaaaaacaggaagaaattgtcaaaataataaaggacaacagagttgttttg
attgtaggagagactggatcaggaaaaactacccaaatccctcaattccttcttgacgac
tgttacaaaaatggaactccctgtcgtatattttgcactcagccaagacgtttggcagcg
gttgctgtggctgaaagagtggcagcagaaagaagagaaaagatcggccagacaattggt
tatcagattcgattagaaagcagggtttctccaaagactctgttaacgttttgcactaat
ggcatactactgcgcacgctaatgacaggagacagcactctatcaactgtgactcatgtt
attgtggatgaagtacatgagagggataggttcagtgacttcttgctaataaaactgagg
gatgtgttgcaaaaacagaccaatttaaaactaattatttctagcgctgctctagatgca
aatctctttattaggtattttggaaactgcccagtagtacacatacaaggaagacctttt
gaagttaaagagatgtttttggaggacattttacgaagcacggggtataccaacaaagag
atggtaaagtacaaaaaagagaagcagcgagaagaaaaacagcaaaacactcttactgac
tggtgttctgctcaagaaaataatagcaaacgggaatctcagagacaaagttctgtcccg
agtgcagctgaggagtataatctcttggatgatggtagtgacacagtatttaatcagctg
accgaaaaagatgccaatagccttgaaccatgggtaataaaagaaatggattcttgtctt
tctgacatctggttgcataaagatactgattcctttgcccaggtgttccatctgatttta
actgaaaatgtcagtgttgattacaggcacagtgaaaccagtgtgactgcactaatgatt
gcttcagggagaggctttctgagtcaagtagaacaactgatcagtatgggagcaagtatc
aactgcaaatcatccaatggctggatggctttggactgggctaagcagtttggacagaca
gaggttgttgacctgttggagtcctacagtgcttcagtggaatctggaaatctggatgaa
agttccctggtccaaacaagtggtagtgaccttagtgcagaggacagagaactgttgaaa
gcttatcatcacagttttgatgatgaaaaagtggatctggacctgattatgcacttactt
tatcacatctgccataactgtggtgctggagcaattttaatatttcttcctggatatgat
gagatagttagcctgagggaccgaattctttttgatgacaagagatttgctgataatgct
cacagataccaggttttcatgcttcattcaaatatgcagactttggatcagaagagggtg
cttaaatgtccacctgctggcatccgcaaaataattctttctactaatattgccgaaacc
agcataacagtcaatgatgttatatttgttattgactcaggcaagatgaaagagaaatct
tttgatgcattgagttgtgttacaatgctaaaaatggtgtggatttcaaaagccagtgct
atccagagaaaaggcagggctgggcgttgtcagcctggagtctgttttcgtctcttcagc
aggctccgatttcagaatatgttggaatttcagactccagaacttctaagaatgccactc
caggagctttgtctacacacaaaacttcttgctccaattaattgtccaattgttgacttt
cttatgaaagctcctgatcctccaccagctttaattgtgagaaatgctgtgcaaatgctt
aagacaatagatgccatggatccttgggaagatctcacagaacttggttatcatctcact
gaattaccagtagagccacaccttggtaaaatggtgttgtgtgctgtggttttgaagtgc
ctggatcctattcttactatcgcttgtactctggcatatcgagacccttttgtcctgcct
acaatggcctctcaaaagcgtgcagccatgctgtgtagaaaacgttttactgcgggaacg
ttcagtgaccacatggctcttctgagggctttccaggcatggcagaaagcacgcagtgat
ggctgggagagaaccttctgtgaaaagaacttcctgtctcaagccacaatggaaatcatc
ataggaatgagaacacagttgcttgggcagcttagagcctcgggttttgttcgagccaga
ggaggagctgatattagagatgttaatactaattctgaaaactgggctgtagttaaagct
gccttagtggctgggatgtatcccaatttagtgcatgtagacagagaaaacctggttttg
actgcaccaaaggagaagaaagtgcggtttcatcctacctctgttcttagtcaacctcag
tataaaaagattcccccagcaaatgggcaagctgcagccattcaggcgctccctacagac
tggcttatatatgatgaaatgacaagaactcacaggatagcaaatatcagatgctgttct
gttgtaacacctgtcactgtatcactcttctgtggaccagctagattaccaagtaatgct
ttgcaggaaccttcatcctttcgaggggatgggttatctaacgataacagtgatagtgag
atggaggaaaaaacatctaatttggcactactgaagctagatgagtggctccatatcagt
atggaccctgaagctgctggtttgctgttgcaactcagacagaagtggcatagcttattt
ctgcgtcgtatccgagctccatctaaaccgtggtctcaagttgatgaaacaactatcaga
gcaattatagctgttttgagttctgaagaacagtcagcaggtttgcagcagccttcagga
attggtcagagaccaagacctatgacttcggaagaatttccttcagcatccacatggagg
tcaatcaacaacagaaaaagctcagcagaaacggaactttccgatgactcctctaatgct
gaaaaagctttaatgaaatctacgcctcctccacttcaccagtcaaagaagtacaaagaa
aaaaacattttacactccaagcgaacttcagatgacaggtcagatcggtcgtcagtgaag
tctacagacagcagtagctatcctagcccctgtgctagtccctgttctccactatctgga
aagggttccaaatctccttcaccacgaccaaatatgccagttcggtacttcataatgaaa
agcagcaatttacaaaacattgatatttctcaacagaagggtatatggtctactacgcca
agtaatgaacgaaaactaaatagagccttttgggaaagccgcatggtttacttaatattt
tctgttcaagggtctggacactttcagggttttgctagaatggcttcagagatagggtgt
gagaaaagtcaagactggggatccgctggtcttggaggtgtgtttaaggtggagtggatc
agaaaagaaagcattcctttccagtttgctcaccacttgctcaacccttggaatgacaac
aagaaagtacaaataagcagagatggccaggagctggaaacacaagtgggagagcaattg
cttcagctttgggaccacattcctttggcaggaaaagctcaacagattgagtatgccaag
tga
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integrated database retrieval system
