Capnocytophaga stomatis: CGC58_03160
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Entry
CGC58_03160 CDS
T05529
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
csto
Capnocytophaga stomatis
Pathway
csto03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csto00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGC58_03160 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csto03021
]
CGC58_03160 (rpoC)
03400 DNA repair and recombination proteins [BR:
csto03400
]
CGC58_03160 (rpoC)
Enzymes [BR:
csto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGC58_03160 (rpoC)
Transcription machinery [BR:
csto03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGC58_03160 (rpoC)
DNA repair and recombination proteins [BR:
csto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGC58_03160 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ATA88814
UniProt:
A0A250FUS9
LinkDB
All DBs
Position
complement(718265..722548)
Genome browser
AA seq
1427 aa
AA seq
DB search
MARDKNTTVSKFDKISIGLASPESILAASRGEVIKPETINYRTHKPERDGLFCERIFGPV
KDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKIG
YLLGLPSKKLDMIIYYERYVVIQPGIAKGPDGEDIQPLDFLTEEEYLNIMESLPVENQYL
EDTDPNKFVAKMGAECLLDLLQRLDLDELSYDLRHKANNESSKQRKTEALKRLQVVEAFR
EAKNNRENKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLME
IKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLLG
KRVDYSARSVIVVGPELKLYECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDKK
EPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGD
QMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKGRRSTPEYP
IKGEGMTFYSAEEVNIAYNEKKLSLNAFIKVRVRDLDEEGNKVYKVLETTTGRVLFNEVV
PAEAGYINEVLTKKSLRDIIGHILKSTSIPTTADFLDKIKNMGYKFAFQGGLSFSLGDII
IPQEKADMIAEANGLVDGIMMNYNMGLITNNERYNQVIDVWTSTNAQLTELAMKRISNDQ
QGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTVGGGEIIENPILSNFKEGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGVEVRALKKNEE
VVETLGERILGRVSLHDVYNPLTEELLVRSGEEITEKVVAKINEAPIEMVEVRSALTCEA
KHGICAKCYGRNLSTGKMVQTGEAVGVVAAQSIGEPGTQLTLRTFHAGGVAGNVSEENKA
EARFNGILEIEDLRAVKGKDNEGNPISVVVRSSELKVVDPTTGMVLQTHDIPYGASIFVK
DKQEVTKGTLLFQWDPYNAVIISEFSGKIAYEGIEQGVTYQIEIDEQTGFQEKVIVESRN
KKLVPTLLILDKNDEVLRSYTLPVGAHIMVENASKVEEGKVLVKIPRNSAKSGDITGGLP
RVTELFEARNPSNPAIVSEIDGVVSFGKIKRGNKEVIVTSRLGEERKYLVKLSSQILVQE
NDYVRAGKPLSDGSVTPDDILKIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVIVRQM
MRKVEIQDPGDTLFLEGQLVHKDDFIEENDKLFGKKIVEDVGDSENLKAGQIVSLRQLRD
ENSLLKRADKNLVIARDIIPATATPVLQGITRASLQTKSFISAASFQETTKVLNEAAVSG
KVDTLDGLKENVVVGHRIPAGTGLKRYEKILVGSKAEMEVAEKKKSK
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagataaaaatacaactgtttcaaaattcgataaaatttctatcggattggct
tcgccagagtcaattttagcggcttctcgtggggaggttatcaaacccgaaaccatcaat
tatcgtacacacaaacctgagcgagatggtttgttttgtgagcgtatttttggtcctgta
aaggattacgagtgtgcttgcggaaaatacaagcgtatccgttacaaggggattgtttgt
gatagatgtggtgttgaagtaacagagaaaaaagtgcgtcgtgatagggtaggacatatc
aatttggtagtgccaattgctcatatttggtatttccgctcgttgcctaacaaaattgga
tatttgttgggcttgccatctaaaaagttggatatgattatttactacgagcgttatgta
gttatccagccgggtatagcaaaaggacctgacggagaagatatccaaccattagatttt
cttacagaagaagagtatcttaacataatggagtcacttcctgttgagaatcagtattta
gaagatactgaccctaacaagtttgtggcaaaaatgggagcagaatgtttgttagatttg
ctccaacgattggatttggatgaactttcttacgatttgcgtcacaaggcaaataacgaa
agttctaaacaacgtaaaacagaagctttaaaacgcttgcaggtggttgaagctttccgt
gaagcgaaaaacaatcgtgaaaacaaaccagaatggatgataatgaaggtaattcctgtg
attccacctgaattacgtccgttagttccgttagatggtgggcgtttcgcaacttccgat
ttgaacgatttatatcgtagggtaattatccgtaacaatcgtttgaaacgtttgatggag
attaaggctcctgaggtgattttgcgtaacgagaagcgtatgttgcaagaatcggtagat
tcattgttcgacaatacacgtaagtcatcagcggttaaaacagaatcaaaccgtccgctt
aaatcactttctgattcattgaaaggaaaacaaggacgtttccgtcaaaacttacttgga
aaacgtgtggattactcggctcgttcggtaatcgttgtaggtcctgaactcaaattgtat
gagtgtggtcttcctaaaaatatggcagcagagctttataagcctttcgttatccgtaag
ttaattgaaagaggaatcgtaaaaacggttaagtctgctaagaaaattattgacaaaaaa
gaacctgtagtttgggatatcttggaaaatgtgattaaagggcatccggtgcttctgaac
cgtgcccccacgttgcaccgtttgggaatccaagccttccagcctaaactaattgaaggt
aaagcaattcagttgcacccactagtgtgtacggcgtttaacgcggactttgacggtgac
cagatggcggtacacttaccattaggtccggaagctattttggaagctcaacttttgatg
ttggcatcgcataacatcttgaatcctgccaacggttcgccgattaccgtaccttcacag
gatatggttttggggctttactatatgaccaaaggcagacgctcaacacctgagtatcca
attaagggagaaggaatgactttctattctgcggaggaagtaaatattgcttacaacgag
aaaaaacttagtttgaatgcctttatcaaagttcgagtaagggatttggacgaggaagga
aataaagtatataaagtgttggaaaccacaacaggtagagttcttttcaacgaagtggtt
cctgcagaagctggatatatcaatgaggtattgactaaaaagtcattgcgtgatattatc
ggtcatattttgaaatccacaagtattcctactacggcagatttcttggataagattaag
aatatgggatacaaattcgctttccaaggaggattgtcgtttagtttgggagatatcatt
attccgcaagaaaaagccgatatgattgctgaggcaaacggtttggttgacggaattatg
atgaactataatatgggtcttattaccaacaacgagcgttataatcaggtaattgacgtt
tggacatcaactaatgctcagcttactgagttggctatgaagcgaattagcaacgaccaa
caaggatttaactctgtatatatgatgttggattctggtgcgaggggttcaaaagagcag
attcgccagcttacgggtatgcgtggtttgatggcaaaaccgaaaaaatcgacagtagga
gggggcgagattatcgaaaacccaatcttgtcgaactttaaagaaggtttgtcaatcttg
gagtacttcatttcaacgcacggtgctcgtaaaggtcttgccgataccgctttgaaaact
gccgatgcggggtacttaacacgtcgtttggtggacgtttcacaagatgttattattaac
acggaagattgtggaacgctacgtggtgtggaggttcgtgcattgaagaaaaacgaagaa
gtggttgaaactctgggagaacgcatcttaggacgtgtttcacttcacgatgtttataat
cctcttacggaagaattacttgttaggtcaggagaagaaatcactgaaaaagtagtggct
aaaatcaatgaagctcctattgaaatggtggaagtacgctctgcacttacttgtgaggct
aaacacggaatttgtgctaaatgttacggaagaaacctttctacaggaaaaatggttcaa
acaggtgaagctgtgggagttgtggctgcacagtctatcggtgagccgggtacgcagctt
acgcttcgtacgttccacgccggaggggttgcaggtaacgtttccgaagagaataaggca
gaagctcgctttaacggtatccttgaaattgaagatttacgtgcagtaaaaggtaaagat
aacgaaggaaatccgattagcgtagtggttcgctcttctgaattgaaagtagttgaccca
actaccggaatggtattgcaaacgcacgatattccgtatggtgcgagcatctttgtaaaa
gataagcaagaggttactaaaggaactttgcttttccaatgggatccgtataatgcggtt
atcatttctgagttttcaggaaaaattgcttacgaaggtattgagcaaggggtaacttat
caaattgaaattgacgaacaaacaggtttccaagaaaaagtgattgtagaatcacgtaat
aaaaaattggtaccaacgttattgattttggataaaaacgatgaggtgttacgttcgtac
actttaccggttggtgctcacattatggttgagaacgcaagtaaagttgaagaaggaaaa
gtattggtaaaaattccgcgtaactctgcaaaatcaggggatatcacaggaggtttacct
cgagttacggagcttttcgaagcacgaaatccttcaaatcctgcaatcgtttctgaaatt
gacggggtagtttcgttcggaaaaatcaaacgtggaaataaagaggttattgttacatct
cgtttgggtgaagagcgtaaatatttggtgaaattgtcaagccaaatcttggttcaggaa
aacgactatgtgcgtgccggaaaaccgctttctgatggttctgtaactccggatgacatt
ttgaaaatcaaaggaccttcggcggttcagcaatatttggtaaacgaggtacaagaggta
tatcgtttgcaaggtgtgaaaattaacgataagcactttgaggtaatcgttcgtcagatg
atgcgtaaagttgaaattcaagacccgggagataccttgttccttgaaggtcagcttgtt
cataaagatgattttatcgaagaaaacgataaattattcggtaaaaaaatagttgaagac
gttggtgattcggagaatttaaaagcaggtcagattgtttctctccgccaattgcgtgac
gaaaattcactacttaaacgtgctgataagaatttagtaattgctcgtgatattattcct
gcaacggctacgcctgtgttacagggtattacaagagcatcgttgcaaaccaagtcgttc
atttcagcggcatctttccaagaaactacaaaagtgttgaacgaagcagccgtaagcgga
aaagtagatacactcgacggattgaaagaaaacgtggttgtaggacatagaattcctgca
ggaacaggtttgaaacgttacgaaaaaatcctcgtaggttcaaaagcagaaatggaagtt
gctgaaaagaaaaaatcaaaatag
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