Capnocytophaga stomatis: CGC58_04030
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Entry
CGC58_04030 CDS
T05529
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csto
Capnocytophaga stomatis
Pathway
csto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CGC58_04030 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csto03400
]
CGC58_04030 (mfd)
Enzymes [BR:
csto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGC58_04030 (mfd)
DNA repair and recombination proteins [BR:
csto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CGC58_04030 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
PepQ_N
Motif
Other DBs
NCBI-ProteinID:
ATA90569
UniProt:
A0A250FZJ1
LinkDB
All DBs
Position
911996..915316
Genome browser
AA seq
1106 aa
AA seq
DB search
MLQKISENTSYIQLFSKIEKGERCLTINHLAGASLSFIIANLYQNTNRNLFVMLSDKEEA
AYFLNDLESLLGDENVIFFPDSYRRPYQIEDTDNANVLLRAEVLNRLGSQQTPLIVVSYP
EALFEKVITRKQLEKNTLKIKKGDALPLDFLNEMLFTYNFNRTDFVTEPGEFSVRGGIVD
VFSFSNNEPYRIELFGNEVESLRTFDVETQLSTRQLSQITIIPNVENKESEEVRQSFLEY
ISKETLFIGKDIDAFQAKIDRLFQKAVDIYDKMSKEVKHLAPEMLFCQSSTLTEQIKTFQ
SLFSGANSLFPSETIPFRTSPQPAFNKQFELLIAYLNEKHAEGFTNYIICSTEQQAKRFD
DIFKEMEQKVHYQTAILSLHSGFVDSDNKINVFTDHQIFERYHKFHLKNGYAKKQAITLK
ELTQLTVGDYVTHIDHGIGKFAGLQKIEVEGKMQEAIKLIYGDRDVLFVSIHSLHKITKY
NGKDGKPPKIYKLGSGAWKALKQKTKAKVKEIAFNLIQLYAKRKEASGFAFAHDSYMQNE
LEASFLYEDTPDQSKATAEVKADMESQKPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQV
AVLVPTTILAFQHYQTFGNRMKDFPVRIDYLNRFRTAKEKKQILEDLAKGSIDVIIGTHQ
IVNESVKYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMAARD
LSVINTPPPNRYPIDSQVIHFNEEIIRDAVLYEIQRGGQVFFINNRVENIREVAGMLQRL
VPDAKIAVGHGQMDGKKLEETMLAFMDGAYDVLVATTIIESGLDVPNANTIFINNAHNFG
LSDLHQMRGRVGRSNKKAFCYFITPPLVAMSDDARKRIQAVAQFTDLGSGFNIAMKDLEI
RGAGDLLGGEQSGFINEIGFETYQKILQEAIVELKENEFSDLYQTKEEDKSYLSDTHIDS
DFELLFPDTYINRVAERLNLYNELSNITSEADLLTYEKNLIDRFGQLPPQAVDLLNSVRL
KWIATKMGIEKLVMKKGKMTGYFISDQQSPFYQSPRFHKVLQFVQRFPDRCKMQEKETRN
GLRLLLIFERITSVDKALNIMQLLEK
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
attcttcaaaaaatttctgagaatacatcatacattcaattattttcaaaaatagaaaaa
ggcgaacgctgtttaactattaatcatttagcaggagcttcgttatcctttatcattgcc
aatctttatcaaaacacaaaccgaaatttattcgtgatgctttccgataaagaagaagcc
gcttattttttgaacgatttggaaagtttgttaggcgatgaaaacgtgattttcttccct
gacagttaccgacgcccgtatcaaattgaggacacggataatgccaatgtgttgcttcgt
gccgaagtgttgaacagattaggctcacagcaaacgcccttgattgtagtgagttatccc
gaagctctttttgagaaagtaattacacgcaaacaactcgaaaagaatacgttaaaaatc
aaaaaaggagatgctctgccgttggattttctcaacgaaatgcttttcacatacaatttt
aaccgaaccgatttcgttaccgaacccggagaattttccgtacgtggcggtattgtggac
gtgttttcattctccaataacgagccttaccgtattgaattattcggaaatgaagttgaa
agcctccgaacctttgacgtggaaactcagctttctacacggcagctttctcaaattact
atcattccgaatgtggaaaataaagagagtgaggaagtccgacagtcatttcttgaatat
atctcaaaagaaacgcttttcattggcaaagatattgacgcttttcaggcaaaaatcgac
cgtttatttcaaaaagcagtcgatatttacgataaaatgtcaaaagaagtcaaacatctt
gctccggaaatgctcttctgccaaagttcaacccttaccgagcagataaaaaccttccag
agtttattttcaggggcaaattcgttgtttccgtccgaaacaattccgtttagaaccagt
ccgcaacccgcttttaacaaacagtttgaacttctcatcgcttatttgaacgaaaaacac
gccgaaggtttcactaactatattatttgttccactgagcaacaagccaaacgctttgac
gatattttcaaggaaatggagcaaaaagtgcattatcaaaccgccattttgtcgctccac
agcggatttgtagattcggacaacaaaatcaacgtcttcaccgaccatcagatttttgaa
cgatatcataaattccacttaaaaaacggatatgccaaaaagcaagccattacactcaaa
gaactcactcaactaactgttggcgactatgttacgcacatcgaccacggcatcgggaag
ttcgcaggcttgcaaaaaattgaagttgaaggcaaaatgcaagaagccatcaagctcatc
tatggcgaccgcgatgtgcttttcgtaagcattcattctctgcataaaatcaccaagtac
aacggcaaagacggcaaacctccgaagatttacaaattgggttcgggagcgtggaaagcc
ctgaaacagaagaccaaagccaaagtaaaagaaatcgcctttaacctcattcagctttac
gccaagcggaaggaagccagcggttttgcctttgctcacgacagttatatgcaaaacgaa
ttggaagcttcgtttctgtacgaggacacgcccgaccaaagcaaggccaccgccgaagta
aaagccgatatggaaagccaaaaaccgatggacaggcttgtttgtggcgatgttggcttc
gggaagacggaagttgccattcgggctgccttcaaagcggtcgataacggcaagcaagtg
gcagtgcttgtgccaactaccattctggcatttcaacattatcagacgtttggtaaccga
atgaaagattttcctgtacggattgattatctgaatcgttttcgtacagccaaagaaaaa
aaacaaattttggaagatttggcaaaaggttcgattgatgtcatcatcggtacgcatcaa
atcgtaaatgaaagcgtgaaatacaaggacttagggcttttaatcgttgatgaagagcag
aaattcggcgtgggcgtaaaagacaaactcaaaacgctaaaagaaaaccttgacgtactg
acacttacggcaacgcccattccgcgtacgcttcaattcagcttgatggcggctcgcgac
ctttcggttattaacacgcctccgccaaatcgctatcctattgatagtcaagtgattcat
tttaatgaggaaatcattcgcgatgcggttttatatgaaattcagcggggcggacaggtt
tttttcatcaataatcgggtggaaaatatccgcgaagtagctggaatgttgcaaaggctg
gttcccgatgccaaaatcgctgtcggacacgggcaaatggacggcaaaaaactcgaagaa
acaatgcttgcctttatggacggggcgtacgatgtgttggttgccacaaccattattgaa
agcgggttggacgtgccgaatgccaataccattttcattaacaacgctcataatttcggg
ctttctgacctgcaccaaatgcgtgggcgtgtgggacggagcaacaaaaaagcgttttgt
tatttcatcacgcctccgcttgtggcaatgtccgatgatgctcgaaaacgtatacaagcc
gttgctcaattcaccgatttgggaagtggctttaacatcgctatgaaagatttggaaata
cgaggagcgggcgacctactcggtggcgaacaaagcggatttatcaacgaaatcgggttt
gaaacctatcagaaaattctgcaagaagccatcgtggagctaaaagaaaacgaattttcc
gacttgtatcaaaccaaagaagaagacaaatcgtacctaagtgatacgcatatcgacagt
gattttgaacttttgttccccgacacatacataaaccgagttgccgaacgcttaaatctt
tataatgaactgagtaacatcacttcggaagccgatttattaacttacgaaaagaatctg
attgaccgcttcgggcaactgcctccgcaagccgttgatttactcaatagcgtacgccta
aaatggattgcgaccaaaatgggcatcgaaaagttagtgatgaaaaaaggaaaaatgaca
ggctattttatttccgaccaacaaagtccgttttatcaaagtccacgttttcacaaggtg
ttgcaatttgtacaacgcttccccgaccgatgcaaaatgcaggaaaaagaaacccgcaac
ggactgcgattgttgctcatctttgaacgaatcacttcagtagataaagccttaaatatt
atgcaattacttgaaaaataa
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