Corynebacterium striatum: CBE89_00485
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Entry
CBE89_00485 CDS
T05059
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
cstr
Corynebacterium striatum
Brite
KEGG Orthology (KO) [BR:
cstr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cstr03019
]
CBE89_00485
Enzymes [BR:
cstr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CBE89_00485
Messenger RNA biogenesis [BR:
cstr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CBE89_00485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_11
ResIII
AAA_19
Helicase_RecD
AAA_30
Flavi_DEAD
AAA_16
AAA_22
UvrD-helicase
ParA
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ART20148
UniProt:
A0A2Z2J4P4
LinkDB
All DBs
Position
80837..83113
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AA seq
758 aa
AA seq
DB search
MFDLARIGAGLPVAETIGTLPSSGNVVVQAPPGTGKTTLVPPALANQAAKQDTSGKILVT
APRRVAVRAAANRLQHLSGQQIGYAVRGDSRHGRDIEFVTPGVLLRRLLRDPELTGVAAV
AIDEVHERQLDTDLVLGMCLELAQLRDDFRVIAMSATVDAQRFSELMDAPVHVTEAVTHP
LDIHYRPAPGRASGDRDFYTHVARQATGHSGSVLVFVPGVREVNLVCEQLPGAYPLHGQQ
TTAEQDAALYTDADRIVVATSIAESSLTVPGVRTVVDAGLSRTPRRDAQRGMSGLVTVST
SKSSADQRAGRAGREAPGTVIRCYSQDDYQHFSPHITPEILSADLTQAALFLECWGAGED
FPLLDQPPARALADAHRTLRSIGATGDVAKQLALLPTDPRLGAALLKYGAGAAHTVAALS
DSPRGDITRITPPKREVERLARLVPDKGPADPGAVVAAAFPERVARRTTTAKEAEYLLAS
GTRARMLEDNGAPWLAVAEVSLSNAGNAIIRAAARIDEQAALYAIGTTEEITATLEGGKV
RGRKVLRAGAIELSSTPVKVTGAAAEEALAAGIREHGLAMFSFSEKAQNLRERLAHLHAH
YGAPWPDVDNAEPAEWLGPELHDVAAGKPVTKVDMYPALQRLLPWPEATRLDELAPERLP
VPSGRDAKIDWSGERPTVSIKLQECFGLAESPVYCGQRVQFHLLSPAGRPLAVTDDLASF
WAGPYQGVRADMRGRYPKHPWPEDPWTAPATARTKNRM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatctcgcacgcatcggcgctggcctgcccgtcgccgagaccatcggcacgctg
ccttcttccggcaacgtcgtggtccaggcaccgccgggcaccggtaagaccacgctcgta
ccgccggcgctcgcgaaccaagctgcgaaacaagacacgagcgggaagatcctggtcacc
gcacctcgccgcgtggccgtgcgcgctgccgcgaaccggctgcagcacctgtccggccaa
caaattggttacgccgtgcgcggcgattcccgccacggccgcgacatcgagttcgtcacc
ccaggcgtgctgctgcgccgactgctgcgcgaccccgaactcaccggcgttgccgccgta
gccatcgacgaggtgcacgagcgtcagctcgacaccgacttggtcctcggcatgtgcctg
gaactggcgcagctacgcgacgacttccgcgtcatcgcgatgtccgccaccgtcgatgcc
cagcgcttctccgaactcatggacgccccggttcatgtcaccgaggccgttacccatccc
cttgatatccactatcgcccggcgcctgggcgcgcttccggcgaccgcgatttttatacc
cacgtcgcccgccaagccacgggccattccggttccgtgctggtcttcgtgcccggcgta
cgcgaggttaacctcgtgtgcgagcaacttcccggcgcgtatccgctgcacggacagcag
accacggctgagcaggacgccgccctgtacaccgacgccgaccgcatcgtggtggccacc
tccatcgcggagtcctcgctgacggtcccgggcgtgcgcaccgtggtcgatgccggactc
tcgcgtaccccgcgccgcgatgcccagcgcggcatgtctggcttggtcacggtttctacc
tcgaagtcgagtgccgatcagcgcgccggtcgcgccgggcgtgaggcccctggcaccgtg
attcgctgctactcgcaggacgattaccagcacttctccccgcacatcactccggagatc
ctcagcgccgatctcactcaggcggcactgttcctggagtgctggggcgcgggtgaggac
tttccgctccttgatcagccaccagcccgcgcgcttgccgacgcccaccgtacgctgcgc
tcgatcggtgccaccggggacgtcgccaagcagctcgctcttctacccaccgacccgcgc
cttggcgccgccttgctcaagtacggcgccggcgctgcgcataccgtcgccgcgctcagc
gattccccacgtggggacatcacgcgcatcactcctcccaaacgcgaggtcgagcgccta
gcgcgcctcgtgcccgacaaaggtccagccgatcctggcgcggtcgtggccgcggccttc
ccggaacgcgttgcgcgccgcaccaccaccgcgaaggaagcagagtacctcctggccagc
ggtactcgtgcgcgcatgctcgaggacaacggcgctccgtggctggccgtggcggaggtg
tccttgtccaatgccggcaacgccatcatccgcgctgccgctcgaatcgatgagcaagct
gcgctctatgccatcggtactaccgaggagatcacggcgacgctcgaaggcggcaaggtg
cgcgggcgcaaggtcctgcgcgccggggcaatcgagctcagctccaccccggtcaaagtc
acgggtgctgcggccgaggaagctcttgctgccggcatccgcgagcacggtcttgccatg
ttctccttcagcgagaaagcgcagaacctgcgcgaacgcttggcgcacctgcacgcgcac
tacggcgccccttggccggacgtcgacaatgcagagcccgccgagtggctgggccccgag
ctacacgacgtcgcggcgggcaaacctgtcaccaaggtcgacatgtatccagcactccag
cgccttctcccctggccggaagccacgcgcctagatgagctggcacctgaacgcctgccc
gtgccctcggggcgcgacgcgaaaatcgactggtccggggaacgccccacggtgagcatc
aagctgcaggaatgctttgggctggcggagtccccggtctattgcggacagcgtgtgcag
ttccacctgctttccccagcgggccgcccactggccgtaactgatgacttggcgagcttc
tgggcagggccttaccagggcgttcgcgccgacatgcgagggcgctatcccaagcatccc
tggcctgaagatccgtggacagcacctgctaccgcacggacgaaaaaccgcatgtga
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