Corynebacterium striatum: CBE89_04000
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Entry
CBE89_04000 CDS
T05059
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cstr
Corynebacterium striatum
Pathway
cstr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cstr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBE89_04000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cstr03019
]
CBE89_04000
03009 Ribosome biogenesis [BR:
cstr03009
]
CBE89_04000
Enzymes [BR:
cstr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CBE89_04000
Messenger RNA biogenesis [BR:
cstr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBE89_04000
Ribosome biogenesis [BR:
cstr03009
]
Prokaryotic type
rRNA processing factors
CBE89_04000
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
ART20743
UniProt:
A0A2Z2IXR4
LinkDB
All DBs
Position
819832..823230
Genome browser
AA seq
1132 aa
AA seq
DB search
MATKKTETKKNENTKNTTENPLSAAAAFAQKVDRASFAAKTRLHAVAKQIGLSSKELTAE
YAELGLKKAAQSSLTPEEIGQVFDAIIAKAAPAQGTDAAAEAPARKTEKKATTKRAVKKS
TKMVAQEQTVDPTAGEKLRNRVRKNVENEISQIEEKVEAELVDAAEEQREEHQNRKTHQG
REVQQDTGTVDVEKLHEALVEAGDDFDEDDYAPVITPMPDDEPEVYDFAPIFMAPKLEKP
APRAQREDSRDDREDHEGDDSHKEESRGGKRRRGSRGTSRGRGGSDSRQDARNNTDEPEV
IEEPKAIKGSTRIEAQRRRRAELREKGRERQHIVSQAEFLARRESVERTMVVRDKERTDG
AGIITQVGVLEDDLLVEHFVTTEAQASLIGNIYLGRVQNVLPSMEAAFIDIGQGRNGVLY
AGEVDWRAAGLGGRGRKIENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPG
GRSAGISRKLPVPERKRLKGILERVVPGDGGAIIRTAAENVSEEAIATDVNRLHDLWEDI
TRRADHEKSTKGAKPVTLYEEPDLLVKVVRDLFNEDFTKLIVDGRRSYNTVSAYVDSMAH
DLADRVEKYDARAHGGEDAFVTYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNT
GKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRLKE
ALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLIETFSTECEACHGRGIIIHEYPVDEEQQN
DAHEHKGRRPRRERRKPEHDPQQHPAAVAMHRHEEAEDARAAASNDAESNEEQKTSIEEL
VAGIIVNDGKDGKREHNDSQENNRKQRRGRRSRRSNRQAGHAHKEQQDSADDIASIGYAA
ADNAAELDDVAEFNSYIPDEEPQVEAKVENQEKEQRKDEGAKRSRGRGRRRSTRTNASQK
SEPQKSGQTYEEAVAEFEASPRRKRRTRGNSRSDHRPQPQDFLPPAEDHSEEVKPEQKAE
DKPKAAAKRARGRRRAVRHTTVKAPQAEAEQVKTEETPAEETKVIRRGRKRAVRKVVARK
APQNGAGETSESAAQPKGKAKAVKKGNKKPEAAETPKAGTRGRRRVARRTAK
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaaaaagactgaaaccaagaagaacgaaaacacaaaaaatacaactgaaaac
ccgctctccgcggcggcagcatttgcccaaaaagtagacagggccagcttcgccgcgaag
acccgcctccacgcggtggccaaacaaatcggtttgagctccaaagagctcaccgccgag
tacgcagagctcgggctcaagaaggccgctcagtcctcgctgaccccagaagagattggc
caagtcttcgacgccatcatcgccaaggccgctccggctcagggcactgacgctgctgca
gaagcaccagctaggaagacagagaagaaggccaccacgaagcgcgcggtcaagaaatcc
accaagatggttgcacaggagcagacggtagaccccacggctggcgagaagctgcgcaac
cgcgttcgcaagaacgtcgagaacgagatctcccagattgaggagaaagtcgaggcagag
cttgtcgacgccgccgaagagcagcgtgaggagcaccagaaccgtaagacgcaccagggc
cgtgaggttcagcaggacacgggcactgtcgacgtcgagaagctgcatgaagccctcgta
gaggccggcgatgacttcgacgaggacgactacgccccagtcatcactccgatgccggac
gacgagccggaagtctacgacttcgcgccgattttcatggcgccgaagcttgagaagcca
gcgccgcgtgcgcagcgcgaagacagtcgcgacgaccgtgaggaccacgaaggcgacgac
tctcacaaggaagaatcccgcggtggcaaacgccgtcgtggcagccgtggcacctcccgc
ggtcgcggtggcagtgattcacgccaagacgcccgcaacaacaccgatgagccagaggtc
atcgaagaaccaaaggcaatcaagggctctacccgcattgaggcgcagcgtcgccgtcgc
gcagagctgcgcgagaagggccgcgagcgtcagcacatcgtctcccaagcagagttcctc
gcacgccgcgagtctgtcgagcgcaccatggtcgtccgcgacaaggagcgcaccgacggc
gccggcatcatcacccaggttggcgtcctcgaggatgacctcctcgtcgagcacttcgtc
accaccgaggcgcaagcatcactcatcggcaacatctacctgggccgcgtacaaaacgtc
ctgccttccatggaggctgccttcatcgacatcggacagggacgcaacggcgtcctctac
gccggtgaggtggactggcgtgccgcgggccttggcggacgcggacgcaagatcgaaaac
gcactcaagtccggtgaccaagtcctggttcaggtggctaaggatccaatcggccacaag
ggcgcacgtctgaccacccagatttccctggcaggtcgctacctggtctacgttccaggt
ggccgcagcgcaggtatctcccgcaagctgcctgtccctgagcgcaagcgcctcaagggc
atcctcgagcgcgttgtcccgggtgacggcggcgccatcatccgtaccgctgcggagaac
gtgtcagaagaagcaatcgcaactgacgtgaaccgtctccacgacctgtgggaggacatc
acccgccgcgccgatcatgagaagtccaccaagggcgccaagccggtcaccctttacgaa
gagccggacctgctggtcaaggtcgtccgtgacctcttcaacgaggacttcaccaagctc
atcgttgacggccgccgttcctacaacaccgtcagcgcctacgttgattccatggcccat
gacttggccgaccgcgtggagaagtacgatgcccgcgcacacggtggcgaggacgccttc
gtgacctaccgcatcgacgagcagctgcacaaggcgctcagccgtaaggtgtggctgccg
tctggcggcacgcttgtcatcgaccgcactgaggcgatgaccgtcatcgacgtcaacacc
ggcaagttcaccggttccggcggtaacctcgaagagactgtcacccgcaacaacctggag
gcagctgaggagattgtgcgccagatgcgcctgcgtgacttgggcggcatgatcgtcgtc
gacttcatcgatatggtcctgcctgaaaaccaggagctggtcctgcgccgcctcaaggag
gctcttggccgtgaccgcacgcgccaccaggtctcggaggtcacctccttgggcctggta
cagatgacccgtaagcgcctgggcactggcctcatcgagaccttttccactgagtgcgag
gcgtgccacggccgcggaatcattatccacgagtacccagtggatgaagaacagcaaaat
gacgcccacgaacacaagggtcgtcgtccgcgtcgcgagcgccgcaagccagaacacgat
ccacagcagcacccagctgccgtggccatgcaccgccacgaggaagccgaggacgcccgc
gcggcagcttccaacgacgctgagtctaatgaggaacagaagacctccatcgaggaactc
gtcgccggcattattgttaacgatggcaaagacggcaagcgcgagcacaacgattctcag
gagaacaaccgtaagcagcgccgcggccgccgctcgcgccgttctaaccgtcaagcgggc
cacgcacacaaggagcagcaggactccgcggatgacattgccagcatcggctatgcagct
gccgataatgcagctgagcttgacgacgtcgccgagttcaattcctacatccccgacgag
gaacctcaggtagaagcgaaggttgaaaatcaagaaaaggagcagcgcaaagacgagggc
gcaaagcgctctcgcggccgtggccgccgtcgcagtacccgcaccaacgcgtcccagaag
tccgagccgcagaagtccgggcagacctacgaggaagccgtagctgagttcgaggcctcc
ccgcgtcgtaagcgtcgcacccgtggcaactcgcgttcggatcaccgcccgcagccgcag
gacttcctaccgccggctgaggaccactccgaggaagtgaagccggagcagaaggcagag
gataaaccaaaggcggcagccaagcgtgcgcgtggtcgccgcagggcagttcgccacacc
acggttaaggctccacaggctgaagccgagcaggtgaaaacagaggaaacgccggcagag
gaaaccaaggtaatccgccgtggtcgcaagcgcgctgtgcgtaaggtcgtcgcccggaag
gcaccccagaatggggcaggggagacgtcggaaagcgcagctcagcctaagggaaaggca
aaggcagtcaagaagggaaacaagaagccagaggcggccgaaaccccgaaggcgggaaca
cgcgggcgacgccgcgtagcacgccgcactgcaaagtag
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