Stygiolobus caldivivus: KN1_07540
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Entry
KN1_07540 CDS
T07597
Name
(GenBank) DEAD/DEAH box helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
csty
Stygiolobus caldivivus
Pathway
csty03022
Basal transcription factors
csty03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csty00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
KN1_07540
09124 Replication and repair
03420 Nucleotide excision repair
KN1_07540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csty03021
]
KN1_07540
03036 Chromosome and associated proteins [BR:
csty03036
]
KN1_07540
03400 DNA repair and recombination proteins [BR:
csty03400
]
KN1_07540
Enzymes [BR:
csty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
KN1_07540
Transcription machinery [BR:
csty03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
KN1_07540
Chromosome and associated proteins [BR:
csty03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
KN1_07540
DNA repair and recombination proteins [BR:
csty03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
KN1_07540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
PhoH
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BCU69457
UniProt:
A0A8D5U5N6
LinkDB
All DBs
Position
complement(740311..741981)
Genome browser
AA seq
556 aa
AA seq
DB search
MKSFSDLKLREWQKKLKKKVEELISSNELVFLNAPTGSGKTIFSLLVGLETKGKVIFLVR
THNEYAPVFRDFIKISEGDLKFSFLVGKPNACLFSNEDANTDDINSNQCEFRNSIIDLNV
DDYPSNYLKKLKEKGIAEGFCPYFSLFNDLNKADVIALTYPYFFIERFREALGINYEDYL
IVVDEAHNIENVGELEEKVLSVFTIDMALKQVGDDFVKFILQRVKEELTRITSDVEGYVK
AKEVPLVSNDELKVLEEEYDELRDKMIREKAIKRIYLGPIIRFYESLNRDRDLVPFIHKN
KVILKSPDISKYLDILNNKDLSFILMSGTLPPEDYIRHVWNITRKFEYIEVEKEVKGKVS
GTYECILAIDVTTKFDNRGDTMWKRYADYLLKVYYQAKSHVFSVFPSYEIMRKVMGYVEV
PKYLEDEDTSIEELYSLIDKFDKVIIGAVGKGKLSEGVELVRDGKSLISDVVIVGIPYPP
PDDYTKLRAQKASERLGKKVEEYLYKIPALMTIRQSVGRGIRGPDDRVQVWLLDKRFDNL
WWKKNLNCFNPKKTKL
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
ttgaagagtttttctgacctgaaacttagggagtggcaaaaaaagttaaagaaaaaagta
gaggaacttataagtagtaatgaattagtatttttaaatgcaccaaccggtagtggaaag
acaatattttctcttttagttgggttagaaactaaaggtaaagtaatatttttagtcagg
acccacaatgaatatgcaccggtctttagggattttatcaagataagtgaaggcgacctt
aagttttcgttcttggtaggaaaacctaacgcgtgtttattttcgaatgaagatgcaaac
actgacgatataaattctaatcaatgcgagtttaggaactctataatagacttaaatgta
gacgattatccaagtaactacttgaaaaaacttaaagaaaaaggaattgcagaaggtttt
tgcccttatttctccctattcaacgacctaaataaagctgacgtaatagccctgacttat
ccctattttttcatagaacgttttagggaggctttagggattaattatgaggattatctt
atagttgtcgatgaggctcacaacatagaaaacgtaggagagttagaagagaaagtgtta
tctgtttttactatcgacatggcgttaaaacaagtcggagacgattttgtaaaatttata
ctccagagagtaaaagaagagctaactaggatcacaagtgacgtagaaggctatgtgaaa
gctaaagaagtaccgctagtctctaatgacgaactaaaagtacttgaggaagaatacgat
gaacttagagacaaaatgataagagaaaaagcgataaagaggatatatttaggcccgata
ataaggttctatgaaagtctgaacagggatagggacttagtaccttttatacataaaaac
aaggtaatattaaagagccctgatatttcaaagtacctagacatattaaataataaagac
ctgtcttttatcctcatgtcaggtacgttaccaccagaagattacataagacacgtatgg
aatataacaagaaaatttgaatacatcgaagtggaaaaagaggtaaaaggtaaggtctcc
gggacttacgaatgtattttagccatagacgttaccactaaatttgataatagaggggac
acgatgtggaaaaggtatgcggattacctgctaaaagtctattatcaagctaaatctcac
gtattttcggttttcccctcatacgaaataatgaggaaagtcatgggttacgtagaggtc
cctaagtatttagaagatgaggatacttccatagaagaactttactctctaatagataag
tttgacaaggtaattataggtgcagtagggaagggaaaattgagtgaaggtgtagaactc
gttagagacggaaagagcttaattagcgacgtagtaatcgtcggaataccttatccaccg
ccagatgattacactaagttaagggcccagaaggcctcggaaaggcttggtaagaaagta
gaagagtacctctataaaatacccgctttaatgaccatcaggcaatccgtcgggagggga
ataaggggacctgatgaccgcgtacaagtctggcttttagataagcggtttgataactta
tggtggaagaaaaacctaaattgctttaatccgaaaaagactaagctatga
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