KEGG   Stygiolobus caldivivus: KN1_07730
Entry
KN1_07730         CDS       T07597                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
csty  Stygiolobus caldivivus
Pathway
csty03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csty00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KN1_07730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csty03019]
    KN1_07730
Messenger RNA biogenesis [BR:csty03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     KN1_07730
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     KN1_07730
SSDB
Motif
Pfam: ECR1_N FtrD-like Zn_ribbon_NUD A2L_zn_ribbon Zn_ribbon_3 EXOSC1 S1 HypA HVO_2753_ZBP DZR DUF7130 Zn_Ribbon_TF Cas12f1-like_TNB DUF8118 Zn_ribbon_NOB1 Rep_fac-A_C Zn_Tnp_IS91 Auto_anti-p27 OB_RRP5_4th C1_2 Zn_ribbon_8 DUF8106 DUF3797
Other DBs
NCBI-ProteinID: BCU69476
UniProt: A0A8D5U4V7
LinkDB
Position
756789..757358
AA seq 189 aa
MLRRQGEILLPGDELNVIEEFIPGEGTYDFNGVVYSSVVGKAFYDMINRKVNSIAFKRPG
VTTIKKAKYVLGVVTGLREDSALVNIYSIEDKQTEPITAYLHISQISNKYLNNIGEAVKV
GDIIRAKPLNSTIPIALTVKQRDLGVVYSRCSICGTKMVKQDEEHLRCPNCGNIEPRKIA
LLQVKKGGS
NT seq 570 nt   +upstreamnt  +downstreamnt
atgctgagaagacaaggagaaattttgcttccgggcgatgagctaaacgtaatcgaggaa
tttattcccggtgagggtacatacgactttaacggtgtagtatattccagcgtagtaggg
aaggcgttttacgacatgataaacaggaaagtcaactcgatagcgtttaagcgacctggg
gtaaccacgataaaaaaggctaaatacgttttgggtgtcgttactgggttgagggaagac
tcggcattagtaaatatttacagtattgaagacaagcagactgagccaataacggcttat
ttgcatatttctcagatttccaataagtatctaaataacatcggtgaagctgtaaaagtg
ggtgatataattagggcgaaacccctaaactcaacaattccgattgcgttaacggtaaaa
caaagggatttaggtgtagtatattctaggtgttctatatgcggtactaaaatggtgaaa
caagacgaagaacatttaagatgtccgaactgtggtaacattgaaccgagaaaaatagca
cttttacaggtgaagaaaggtggaagttaa

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