Stygiolobus caldivivus: KN1_19180
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Entry
KN1_19180 CDS
T07597
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
csty
Stygiolobus caldivivus
Pathway
csty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KN1_19180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csty03019
]
KN1_19180
Messenger RNA biogenesis [BR:
csty03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
KN1_19180
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
KN1_19180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
KH_1
RRP4_S1
RRP40_S1
S1
KH_2
Chol_subst-bind
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
BCU70621
UniProt:
A0A8D5ZJH7
LinkDB
All DBs
Position
1954467..1955222
Genome browser
AA seq
251 aa
AA seq
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MVENAAPKIFYQDRSIVTPGDLIAEGDLQVSWSPYFYKIGNKYYSAITGLLSVKEGNVFE
VIPLEGQHYYPRIGDTVLGLIEDIEIYGWVADIKSFYSAYLPASSLLGRAITPGEDLRRF
LNIGDYVIAKVEAFDRTINPVLTVKGKGLGRVSSGVVVEISPAKVPRVIGKNKSMLEVLT
SETGCDVQVAQNGRILIKCANSLSEEALVSAINIIQSESHIKGLTERIRAYLREKLGGSR
NDASAEAKANT
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
gtggtcgaaaatgcggctccaaaaattttctaccaagatagatctattgtgacaccagga
gatttaatcgcagagggtgacttacaagtatcatggtctccttatttttacaagataggg
aataagtattattcagcgataacaggccttttaagtgttaaggaaggaaatgtatttgaa
gttatcccattagaaggacagcattactatcctagaataggagatacggtgttaggactg
atagaagacatagaaatttatggatgggttgctgatatcaaatcattttattcagcttat
ctacctgcttcatcgttgcttggaagggctataaccccaggtgaagacctaaggcgtttc
ttgaatataggagattacgtaatagctaaagtagaggcctttgataggactattaacccg
gttcttactgttaaaggtaaaggacttggtcgagtctcatctggagtagtggtagaaata
tcaccagctaaggttccaagagttatcggtaagaataagagtatgttagaagttttaaca
tcagaaaccggttgtgatgttcaagttgctcaaaatggaaggattttgataaaatgtgca
aatagcttaagcgaggaagcattagttagtgctattaatataatccaatcagaatctcat
ataaaaggcttaacagaaagaataagagcttatttgagagagaaattaggtgggagtaga
aatgatgcaagtgcagaagccaaggctaatacttga
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