Stygiolobus caldivivus: KN1_19190
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Entry
KN1_19190 CDS
T07597
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
csty
Stygiolobus caldivivus
Pathway
csty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KN1_19190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csty03019
]
KN1_19190
Messenger RNA biogenesis [BR:
csty03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
KN1_19190
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
KN1_19190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
BCU70622
UniProt:
A0A8D5ZJW4
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All DBs
Position
1955188..1955919
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AA seq
243 aa
AA seq
DB search
MMQVQKPRLILENGLRTDGRRPDEMRPIKIELGVLKNADGSAIFEMGNTKVLAAVYGPKE
MHPRHLALPDRASLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLTELFPRT
VIDVFMEVLQADAGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVIVLDLNEPEDM
WGEADMPVAMLPSLGQVALLQLNGNMTPDEFRKGLELVQKGITEIYNLQKEALRKKYAEY
KEE
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaagtgcagaagccaaggctaatacttgagaacggtttaaggactgacggaaga
agaccagacgaaatgagacctattaaaatagaattaggcgtactaaaaaacgcagacggt
tcagctatctttgaaatgggtaatactaaagtactagctgctgtatatggaccaaaggag
atgcatccaaggcatttagcattaccagacagagcttctttgagggtcagatatcatatg
acgccgttttctacagatgaaaggaaaaacccagctccgagcagacgtgaaattgagtta
tcaaaagttataagagaggctttagaatcagcagtcttaacagaattatttcctagaacg
gtgatagatgtctttatggaagtattacaagcagacgcgggtaccaggctagtttctttg
atggcagcgtcaatggcattggcagacgcgggtattcctatgagagacctgatagcggga
gtagctgtaggtaaagcagatggagtaatagttcttgatcttaatgaaccagaagatatg
tggggcgaagctgatatgcctgttgctatgcttccttccttaggtcaagtggctttactc
cagctgaatggtaacatgacgcctgacgaatttaggaaaggcttagaattagtacaaaag
ggtataacagaaatttataatcttcaaaaagaggcattaaggaaaaaatacgctgaatac
aaggaggagtaa
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