Candidatus Caldarchaeum subterraneum: CSUB_C0154
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Entry
CSUB_C0154 CDS
T02904
Name
(GenBank) hypothetical protein
KO
K15172
transcription elongation factor SPT5
Organism
csu
Candidatus Caldarchaeum subterraneum
Brite
KEGG Orthology (KO) [BR:
csu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
CSUB_C0154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csu03021
]
CSUB_C0154
03019 Messenger RNA biogenesis [BR:
csu03019
]
CSUB_C0154
Transcription machinery [BR:
csu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CSUB_C0154
RNA polymerase I system
CSUB_C0154
Messenger RNA biogenesis [BR:
csu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
CSUB_C0154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW
KOW2_Spt5
KOW5_SPT5
Motif
Other DBs
NCBI-ProteinID:
BAJ50017
UniProt:
E6N4E3
LinkDB
All DBs
Position
157892..158800
Genome browser
AA seq
302 aa
AA seq
DB search
MDRLSTAGMRYFAVKTTVGQERTVANVLEARFHGIFLDFVGESVGTVAISDKTHAAVIFV
SPKTTTLEKVAVYISKAGEPTEPLRAQLLEYSDETGFGSEPLGEGSYDPLLLKTEGWAEI
VFRSPVKLKRGASYALKIFKTVEEPGGYNLFLGEGEKEELRFKVLEQEEWRDDARLPLFK
LIEKPAIASIFILPALKGYVFVEATSKEVIADALQNVRHVKARPPMPVKLETIASHLVEK
PLIEVLAAGQMVEIVSGPLKGIVGKVIRVEKSRREVTLELKEAAFQLPISVSIDAVRPLD
KT
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
gtggacaggttgagcacagctgggatgaggtatttcgcagtcaagacaacggtggggcag
gagaggacggtagcaaacgttctcgaggcaaggttccacggcattttcctcgactttgtc
ggagaatcggtgggaacagtagcgataagcgacaaaactcatgctgcagtgatattcgtc
tccccgaaaacaaccacgttagagaaggtggcggtttacatatccaaggccggcgagccg
accgagcctctacgcgcccagttattggagtacagcgatgaaacagggttcggttcagag
cccctaggtgagggaagctacgaccccctacttctcaagacagaggggtgggctgagata
gttttccgctcccctgtgaaacttaagcgaggcgcatcctatgctctgaagattttcaaa
acagttgaggagccaggtggatataacttgtttctaggagaaggtgagaaagaagagctg
cggttcaaggtgttggagcaggaggagtggagggacgatgctcggctgcctctattcaag
ctgattgagaagccggcgattgcgtctatattcattctgcccgccttgaagggctacgtg
tttgttgaggctacgtctaaagaggttatagccgatgcgctgcagaatgttagacatgtg
aaggcgaggccgccgatgcctgtaaagctggagaccatcgcctctcacttggttgagaaa
cctttgattgaggtgttggcggctgggcagatggttgagattgtctccggcccgttgaag
ggtatcgtcggcaaagtcatcagggtcgagaagtcgaggcgcgaggtcacgcttgagctt
aaggaggcggctttccagctccccatatccgtctcaatagacgccgtccgccccctagac
aagacgtaa
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