Candidatus Caldarchaeum subterraneum: CSUB_C0415
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Entry
CSUB_C0415 CDS
T02904
Name
(GenBank) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
csu
Candidatus Caldarchaeum subterraneum
Pathway
csu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSUB_C0415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csu03019
]
CSUB_C0415
Messenger RNA biogenesis [BR:
csu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CSUB_C0415
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CSUB_C0415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Prok-RING_1
ECR1_N
zf-C2HC5
RecO_C
C1_2
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
BAJ50276
UniProt:
E6N525
LinkDB
All DBs
Position
404702..405274
Genome browser
AA seq
190 aa
AA seq
DB search
MRKKLVVPGEVLCVLEEFLPRLGSFVNGEGKVKARVLGEAVYDLRSKEVSVRPLKQIIDL
RAGDRVIAEVKDVQDKIAVAEAFLKLPNIPLKYRRTGVVIAKRNDVLDNLLGIGDIAVLT
VRGVYRGINTFDVYSPGCGVMLAICSVCGNVLDKRDNILSCSRCGNKERRKTVLKYGNLD
ILKQLIGEEL
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
ttgaggaagaagctggttgtgccgggcgaagttctctgcgtattggaggagttcctgcca
aggcttggttcattcgtcaacggcgagggcaaagtcaaggcacgggttctcggcgaagca
gtctatgacctcaggtccaaggaagtgagtgttagacctctgaagcagataatcgacctc
agggcaggggacagggtcatagctgaggtcaaagacgtgcaggacaaaatcgcggtggca
gaggccttcctgaagcttccaaacatcccgctcaaatacaggaggacaggggtcgtgata
gcgaagagaaacgatgtcctggataaccttctcggcatcggagacatagcggtcctcact
gtccgaggagtctaccgcggaataaacaccttcgatgtctactctccgggatgcggggtg
atgctcgccatatgcagcgtctgcggaaatgtcttggacaagagggacaacattctctca
tgtagtagatgtggcaacaaggagcggcggaaaacagtgttaaaatacgggaacttagac
atccttaaacagttgatcggtgaggagctttga
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