Candidatus Caldarchaeum subterraneum: CSUB_C0445
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Entry
CSUB_C0445 CDS
T02904
Name
(GenBank) archaea-specific RecJ-like exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
csu
Candidatus Caldarchaeum subterraneum
Pathway
csu03410
Base excision repair
csu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CSUB_C0445
03430 Mismatch repair
CSUB_C0445
03440 Homologous recombination
CSUB_C0445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csu03400
]
CSUB_C0445
DNA repair and recombination proteins [BR:
csu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CSUB_C0445
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CSUB_C0445
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CSUB_C0445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
CDC45
VitK2_biosynth
Motif
Other DBs
NCBI-ProteinID:
BAJ50306
UniProt:
E6N598
LinkDB
All DBs
Position
427084..428550
Genome browser
AA seq
488 aa
AA seq
DB search
MKKLEGDFEGFVKQAENAAERIRNWVAQGEFIDIFTHNDADALSSAGIIAAALRREDARF
RVRSLNRIDDFIELFNSGYVEAKCIIFTDMGSGYTSELLPLLGNRSVAIFDHHEPVQASL
PPEWVHVNPHQYGFDGAREISASGVSYFVAKAMNPANIEYSPIAVVGALGDLQDKNTQRR
LHGLNEYIVAEAVENKLLEVKDDIILYGRTFRPLHVSLAMTTSPYIPGISGNEQAAYSFL
TSLGIGVKEGEQWRTLADLSEEEKKKLYNGLIEYLVSKNLPTTIANELIGKTYDLVKESV
WTYLSDAREFATLLNACGKSGKAWAGILVAMGARSEALEEAQRILEEYRLSVARAMDYVS
QPGVLEELSHIVVLKGGDVIDYRQVSSVASILSSSGLLPPDKPLIALANAGKTVKISARA
SKQLVDRGLNLGAILSRLGAQFGGKGGGHNIAAGAEIPYDHMIKFLAELDKTVGENVASS
KGEVTHND
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaagttggagggagactttgagggctttgttaaacaggctgagaacgcagcagag
agaatacgaaactgggtagctcagggcgagttcatagacatcttcacccacaacgacgca
gacgcactctcctctgcaggaataattgccgcggccctgcgcagggaagatgcaagattc
agggtgcggtcgctcaaccgcatcgacgatttcatcgagctctttaacagtggatatgtc
gaggcaaagtgcattatcttcacggacatgggcagcggctacacatctgagcttttgccc
cttttagggaataggtcggtggccatattcgaccatcacgagcctgtgcaagcttcgctg
ccaccagagtgggtgcatgttaatcctcatcaatacggcttcgacggagcgagggagatt
agtgcctctggagtatcctacttcgttgccaaagccatgaacccagccaacatcgaatac
tcccccatagcagttgtgggggccctcggagaccttcaggacaagaacactcagcggagg
cttcacggcctcaacgaatacatcgtcgccgaagctgttgaaaacaagcttcttgaagtg
aaggacgacatcatactttatggacgcaccttcagaccactccatgtctcgctggccatg
acgacaagcccctacataccaggaataagtggaaacgagcaagcagcctacagcttccta
acttccctgggtattggggtgaaggagggtgagcagtggcgcaccttggccgatctctcg
gaggaggagaagaaaaagctctacaacggcttgatagagtatctggtctccaagaacctg
ccgacaacaatagccaacgagctcatagggaaaacctacgacctcgtaaaagaatctgtc
tggacatatctaagcgatgcaagagagttcgccactctgctcaacgcatgcggaaaatcg
ggaaaagcatgggcggggatactggtggccatgggggcccgttcagaggcgctggaggag
gcgcagcgcattctggaggaatatcgtctaagcgtggccagggctatggattatgtttct
cagcccggtgtcctggaagagctttctcacatcgtagttctcaagggcggagatgtgata
gattataggcaggttagctctgtggcttcgatactttcgtcgtcggggcttctgccgccc
gataaacctttgattgccttggctaacgcgggcaagaccgtgaaaatatcggctcgggcg
tccaagcagcttgtagacagagggcttaacctgggcgctatcctcagccgccttggggcg
cagtttggtggaaagggtgggggacacaacatagccgcgggagctgaaattccctatgac
catatgataaagttcttggctgagcttgataagacggtgggcgagaatgtcgcatccagt
aaaggtgaagtcacgcataacgattag
DBGET
integrated database retrieval system
