Candidatus Caldarchaeum subterraneum: CSUB_C1436
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Entry
CSUB_C1436 CDS
T02904
Name
(GenBank) tRNA-intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
csu
Candidatus Caldarchaeum subterraneum
Brite
KEGG Orthology (KO) [BR:
csu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csu03016
]
CSUB_C1436
Enzymes [BR:
csu01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
CSUB_C1436
Transfer RNA biogenesis [BR:
csu03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
CSUB_C1436
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Paralog
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
TSEN34_N
Motif
Other DBs
NCBI-ProteinID:
BAJ51287
UniProt:
E6N8B4
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All DBs
Position
complement(1403277..1403813)
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AA seq
178 aa
AA seq
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MFEGLLLGDSVVVWDVEQARQLYRLGFYGKPLGIPKPKDMNFDAPLVLDLVEALYLARQR
KLRILRGGVEVSPKEFEEYASSVEPNFPTKYRVYSDLRDRGFVVLPGIKFGSDFAVYRHG
PGIDHAPFIIQIKKGDEKLSALEIIRAGRLATSVKKHFTISVPAEEKVVYLMFEWWRA
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgagggcctcctgctgggagacagcgtagtcgtatgggatgttgagcaggcgcgg
caactgtaccgcctcggcttctatggaaaacccctcggcataccgaagcccaaggacatg
aactttgacgcaccgctggtcctagaccttgtcgaagccctgtacctcgccaggcagcgg
aagcttcgaatactccgcggcggtgtggaggtttctccaaaggagtttgaggaatacgcc
tcatctgtggagccgaatttcccaacaaaataccgtgtatactcagacctccgtgaccgc
ggtttcgtggtccttcccggcataaagttcggcagcgacttcgctgtttatcgacacggc
cccggcatagaccatgcgcccttcatcatacaaattaagaaaggtgatgaaaagctctct
gccctggagattataagggccggacgcctcgcgacctccgtcaaaaaacatttcacgata
tctgtcccagccgaggagaaagttgtttacctgatgtttgaatggtggagagcctag
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