Litchfieldia suaedae: IM538_00225
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Entry
IM538_00225 CDS
T08143
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
csua
Litchfieldia suaedae
Pathway
csua03030
DNA replication
csua03430
Mismatch repair
csua03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IM538_00225 (holB)
03430 Mismatch repair
IM538_00225 (holB)
03440 Homologous recombination
IM538_00225 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csua03032
]
IM538_00225 (holB)
03400 DNA repair and recombination proteins [BR:
csua03400
]
IM538_00225 (holB)
Enzymes [BR:
csua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IM538_00225 (holB)
DNA replication proteins [BR:
csua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IM538_00225 (holB)
DNA repair and recombination proteins [BR:
csua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IM538_00225 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA_5
AAA_22
GFA
Motif
Other DBs
NCBI-ProteinID:
QOR66693
LinkDB
All DBs
Position
44107..45111
Genome browser
AA seq
334 aa
AA seq
DB search
MSKSWEQLEHYQPTVLKMIGNSIQKGRVSHAYLFEGSRGTGKREVSILFAKSLFCSNPVD
YKPCNECSNCRRISSGNHPDIHIVEPDGLSIKKGQIQALQEEFSKTGVESNKKLYIIDHA
DKMTTNAANSLLKFLEEPGKQTVAILLTEQVHRMLNTILSRCQVLPFKPLTPHVIAGGLQ
ENGFNPSMALLVAHVTNNLEDATELCKDDSFAQSRKIVLQLYEVLINRPGNALFYIQDKW
LTHFKEKEELFLGLDLLLLVYKDLLFIQLGNEDKVIYSDIIQELKQQALITSGKRVCDQI
EAILEAKKRLNTNMNPHLLMEQLVFKLQEGLQLV
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaatcgtgggaacagctcgagcattatcagcctacagttttaaaaatgatcggt
aatagtatacaaaaagggcgtgtttcccatgcctatttgttcgaaggaagtagaggaaca
ggaaagagagaagtcagcatcctgtttgccaaaagtctattttgctcgaatcctgttgat
tacaaaccttgtaatgaatgttctaactgccgaagaatatcgtcgggaaatcacccagat
attcatatcgtagagccagatggtctttccataaaaaagggtcaaatccaagctttacaa
gaggagttttcaaagacaggtgttgaatctaataaaaagttatatattatagatcatgca
gacaaaatgacgacaaatgctgctaatagtttactaaaattcttagaggaacctggtaaa
caaacggtggcgattcttctaacagagcaagttcatcgtatgctaaatacgatattatct
agatgccaagtcttaccttttaagcctttgacaccacatgtaatagcaggtggcttgcag
gaaaatggctttaatccttctatggctcttctagttgctcatgtaaccaataatttagaa
gatgctactgaattatgcaaggatgattcgtttgcacagtctagaaaaatagtgttacaa
ttatatgaagtattaataaacagaccggggaatgccctcttttatatacaggataaatgg
cttacccattttaaagaaaaagaagagctattcctagggttagatttattattactagtt
tataaagatttattatttatccagcttggtaatgaggataaggttatatatagtgatatt
attcaagaattaaaacaacaggctcttattacttcgggaaagcgagtctgtgatcaaata
gaagccatacttgaggctaaaaaaaggttaaacaccaacatgaatccacacttattgatg
gagcaattggtatttaaattgcaggaggggttacagcttgtatga
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