Litchfieldia suaedae: IM538_00870
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Entry
IM538_00870 CDS
T08143
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
csua
Litchfieldia suaedae
Pathway
csua03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IM538_00870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csua03021
]
IM538_00870
03400 DNA repair and recombination proteins [BR:
csua03400
]
IM538_00870
Enzymes [BR:
csua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IM538_00870
Transcription machinery [BR:
csua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IM538_00870
DNA repair and recombination proteins [BR:
csua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IM538_00870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
PASTA
DUF961
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
QOR66796
LinkDB
All DBs
Position
156831..157775
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPKIETVEIGEDTKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSIQIDG
VLHEFSTIEGVVEDVTSIILNVKKLALKIYSDEEKTLEIDVQGEGAVTAADITHDSDVEI
LNPDLHIARLAKDAHFRVRLSARRGRGYSPADANKREDQPIGVIPIDSIFTPVSRVTYQV
ENTRVGQVSNFDKLTIDVWTDGSTGPKEAIALGSKILTEHLNIFVGLTDEAQNAEIMVEK
EEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELAHKTEEDMMKVRNLGRKSLEEVK
AKLEDLGLGLRKDD
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaaattgaaaaaccaaaaatcgaaacggttgaaatcggcgaagataccaagttt
ggtaaattcgtggtcgagccactcgagcgtggatatggtacaactttgggtaactccttg
cgtcgtatcctattgtcttctctccctggtgccgctgtaacatctatacaaatagatggt
gtactgcatgagttctcaacaattgaaggcgtcgtcgaagatgtaacatctattatttta
aatgtgaaaaagctagcacttaaaatctactctgatgaagagaagacgctcgaaattgat
gtacagggtgaaggagcagttacggctgcagatattactcacgatagtgatgtagagatt
ctaaatccggaccttcacattgctagattagcaaaagatgcacatttccgcgtaagatta
tcagcaagaagagggcgtggttatagcccagctgatgcaaataaacgtgaagatcaacca
ataggggtaattcctattgactcaatctttacaccggtatctcgtgttacttatcaagtt
gaaaacactcgtgtaggtcaagtttcaaactttgataagcttacaattgacgtttggact
gacggaagtactggtccaaaagaagcaattgcacttggttccaaaattttaactgagcat
ttaaatatctttgttggacttactgatgaggcgcaaaacgctgaaattatggtagagaaa
gaagaagaccaaaaagaaaaggttctagaaatgacaattgaagaacttgatctttctgtt
cgttcttacaactgcttgaagcgtgctggcatcaataccgtacaagaacttgctcataaa
acagaagaagatatgatgaaggttcgtaaccttggtcgcaaatcattagaagaagttaag
gctaaacttgaagatttaggtttaggcttgcgtaaagatgactag
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