Litchfieldia suaedae: IM538_01145
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Entry
IM538_01145 CDS
T08143
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csua
Litchfieldia suaedae
Pathway
csua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM538_01145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csua03019
]
IM538_01145
03009 Ribosome biogenesis [BR:
csua03009
]
IM538_01145
Enzymes [BR:
csua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IM538_01145
Messenger RNA biogenesis [BR:
csua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IM538_01145
Ribosome biogenesis [BR:
csua03009
]
Prokaryotic type
rRNA helicases
IM538_01145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
GRP
NDK
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QOR66835
LinkDB
All DBs
Position
203439..204959
Genome browser
AA seq
506 aa
AA seq
DB search
MATFSELGINEELLKSISKMGFEEATPIQAQTIPLALKRQDVIGQAQTGTGKTAAFGIPL
IEKIDVNVQTIQGIVIAPTRELAIQVSEELSKIGHFNRARILPIYGGQDINRQMRALKKN
PQIIVGTPGRLIDHINRKTIRLQNVHTVVLDEADEMLNMGFIEDIESILSTVPEDRQTLL
FSATMPGPIQRIAERFMRDPQIVKVKTKEVTVPNIEQYYVETQEKKKFDVLTRLLDIHSP
ELAIIFGRTKRRVDELSEALTLRGYAAEGIHGDLSQAKRISVLRKFKEGSIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRVGRTGRAGKHGIAITFVSPREMGQLKHIERTTK
RNMERLVPPTLDEALEGQQKVTIEKLLATIENENISYYKRAAEELLEEHESVSVVAAAIK
MMTKEPDKTPIQLTEERPVVSKRDKGRSGGGGDRNRSGGYRGGGDRNRSGGGGGRSHGGG
TGGGGNRGSRPPAGKRRAPRKQESRP
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
ttggcaacatttagtgaattagggattaatgaagagttattaaaatcaattagtaaaatg
ggatttgaggaagctacaccaatacaggctcaaacgattccattggcactcaaacgtcaa
gacgtaattgggcaagcgcaaacaggtactggaaaaacagcagcattcggtattccgtta
attgagaagattgatgtgaacgttcaaacgattcaaggaattgttattgcacctacacgt
gagcttgcaattcaagtatctgaagaattaagtaagattggtcactttaaccgtgcgcgt
attttaccaatctatggtggtcaagatattaatcgtcaaatgagagcgttaaaaaagaat
cctcaaattattgtaggaacaccaggaagattaattgaccatattaatcgtaaaactatt
cgtttacaaaatgtacatacagttgtacttgatgaagcggatgagatgttaaacatgggc
ttcattgaagatattgagtccattttatcaacagtaccagaagaccgccaaacattactt
ttctctgcaacaatgccaggaccaatccaacgcattgcagaacgtttcatgagagatcct
cagattgttaaggtaaagacgaaagaagtaacagttccaaacattgaacaatactacgtt
gaaacacaagaaaagaagaaatttgacgtattaacaaggttgctggatatccattctcca
gaattagctattatcttcggaagaacaaagcgtcgtgtagatgaattatcagaagctcta
acattacgtggctatgctgctgaaggaattcatggtgacttaagccaagcaaaacgtatt
tcagttcttcgtaagtttaaagaaggctcgattgagatactagtggcaacagacgttgca
gctcgtggtctagatatatctggtgtaacacatgtatataactttgacattccacaggac
ccagaatcgtatgttcaccgtgttggtagaacaggacgtgcgggtaaacatggaattgcg
attacattcgtatctccacgtgagatgggtcaattgaaacatattgaaagaacaacgaaa
cgtaatatggagcgtttagttccaccgactcttgatgaagcattagaaggtcaacaaaaa
gtaacgatcgagaaacttttagcaacgattgaaaatgaaaatatttcatattacaaacgt
gctgcagaagagcttcttgaagagcatgaatcagtatcagttgttgctgcagcgattaaa
atgatgacaaaagaacctgacaaaacaccaatccagcttactgaagagcgtcctgtcgtt
tcaaaacgcgataaaggtcgcagtggtggtggtggagatcgtaaccgcagtggtggttat
agaggtggtggagaccgtaaccgcagtggcggtggtggtggcagaagtcacggtggaggc
accggcggtggcggtaacagaggaagtcgtccgccagcaggaaaacgtcgcgctccgcgc
aaacaagaaagtagaccataa
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