Litchfieldia suaedae: IM538_01610
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Entry
IM538_01610 CDS
T08143
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
csua
Litchfieldia suaedae
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csua03009
]
IM538_01610 (rlmD)
Enzymes [BR:
csua01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IM538_01610 (rlmD)
Ribosome biogenesis [BR:
csua03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IM538_01610 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
MTS
Methyltransf_25
Cons_hypoth95
RrnaAD
N6_Mtase
Methyltransf_11
N6_N4_Mtase
UPF0020
Methyltransf_23
Methyltransf_12
TPMT
Motif
Other DBs
NCBI-ProteinID:
QOR68774
LinkDB
All DBs
Position
298242..299621
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AA seq
459 aa
AA seq
DB search
MTNTQVPVAKNEYYDVTFEDLTHDGAGVAKVEGFPIFVQNALPEERAKIKIIKVKKGYAF
GRLIELQEKSQDRVDAPCPLYKECGGCQLQHLSYNGQLKAKQKQVQDVLARIGHLKDIHV
HPVLGMEDPWRYRNKAQVPVGEREGGLVAGFYQQRSHEIINMEACLIQQEKNDQVIQTVK
AICEKYGVTAYNEEKYKGTIRHIMARYGLVTNEIMVVLITKTNELPNKEKIIEEIHTNLP
NVKSIVHNINQKRTNVIFGDETNVLWGEEYIYDYIGDIKFAISARSFYQVNPEQTKVLYD
KALEYANLTGEETVIDAYCGIGTISLFLAQKAKKVYGVEIVPEAIEDAKRNALLNGIENA
EFAVGESEVVIPRWKAEGIKADVIVVDPPRKGCDEALLNTIIEMKPKRVVYVSCNPATLA
RDLKILEDGGFKTVEVQPVDMFPHTTHCEAVAKIEFRIE
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatacgcaagttccagttgcaaagaatgaatactatgatgttacctttgaagac
cttactcacgatggagctggggtggcaaaggttgaagggtttccgatctttgtgcaaaac
gccttaccagaggaacgagctaaaataaaaataatcaaggtgaaaaaaggctatgccttt
ggccgcttaattgaacttcaagaaaagagccaagaccgagtggatgccccatgtccactt
tataaagaatgtggtggatgtcagttgcaacatctaagctataatgggcaactaaaagca
aaacaaaagcaagtacaagatgtcttagcgagaattgggcatctgaaggatatccatgta
caccctgtattaggaatggaagatccatggagataccgtaacaaagcacaggttcctgta
ggggaacgagaaggcggcctagttgcaggattttatcaacaacgaagccatgaaatcatt
aacatggaagcctgtttaattcagcaagaaaaaaatgatcaggtgatccaaacggttaaa
gcaatctgtgaaaaatatggtgtaactgcctataatgaggaaaagtataaaggaacgatt
cgtcatattatggctcgttatggattagttaccaatgaaatcatggttgttctaattaca
aaaacaaacgagcttccaaataaagaaaaaattatcgaagaaatccatacaaacctacca
aatgtaaaatcaattgttcataatattaaccagaagcgaacaaatgttatttttggtgac
gaaaccaatgtcctatggggtgaagaatacatttatgattacataggagacattaagttt
gcgatttcagcacggtccttttatcaagtaaatcctgaacaaacaaaggtgctctatgat
aaggcactggagtatgcaaatctaaccggcgaggaaacggtcatagatgcgtattgtgga
atcggaacgatttccttattcttagcccaaaaagctaaaaaagtatatggggtagagata
gttccagaagcaattgaagatgcaaaaagaaacgcgttgttaaatggaattgaaaacgca
gaatttgctgtaggcgaatcggaagttgtcatcccaagatggaaagcagaagggattaaa
gctgatgtgattgtcgtagatcctcctcgtaaagggtgcgatgaagcactgctaaataca
attatagaaatgaagcctaagcgggttgtatatgtatcctgtaaccctgcaactcttgct
agggatttaaagatccttgaagatggtgggtttaagacagttgaagttcagccggttgat
atgtttccacatacaacgcattgtgaggctgttgcaaaaattgagtttaggattgaataa
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