Litchfieldia suaedae: IM538_06560
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Entry
IM538_06560 CDS
T08143
Symbol
abc-f
Name
(GenBank) ABC-F type ribosomal protection protein
KO
K18231
macrolide transport system ATP-binding/permease protein
Organism
csua
Litchfieldia suaedae
Pathway
csua02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
IM538_06560 (abc-f)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
csua02000
]
IM538_06560 (abc-f)
01504 Antimicrobial resistance genes [BR:
csua01504
]
IM538_06560 (abc-f)
Transporters [BR:
csua02000
]
ABC transporters, eukaryotic type
Other subfamilies
Macrolide exporter
IM538_06560 (abc-f)
Antimicrobial resistance genes [BR:
csua01504
]
Gene variants
Macrolide resistance genes
Transporters
IM538_06560 (abc-f)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
ABC_tran_Xtn
SMC_N
ATP-synt_ab
AAA_22
AAA
TsaE
DO-GTPase2
AAA_29
NACHT
RNA_helicase
NPHP3_N
AAA_25
RsgA_GTPase
MobB
AAA_16
MMR_HSR1
NB-ARC
AAA_23
RuvB_N
AAA_24
Zeta_toxin
ATPase_2
Viral_helicase1
DUF87
AAA_14
Motif
Other DBs
NCBI-ProteinID:
QOR67792
LinkDB
All DBs
Position
1250960..1252648
Genome browser
AA seq
562 aa
AA seq
DB search
MTVMKIRDIKKSFGDKVILEKVNADFKKGDRIGLVGNNGAGKTTLANIIYGKIQPDSGTV
NISKQGLKMGFLLQSTEYTVTDFKEVMNTSPKRDLLMHSSQLGLKKLQEWDGERLQHLSG
GEKLKLSLARIWAAKPDVLILDEPTNHLDYQGVEWLVGEIKQFAGTVIIISHDRYFLDQT
VSQVLELDNGKATVYKGNYSEYREEKERRFLEQMHHYEVQQKRKEKVEQQIENLQNWSDK
AHKQSTKQDGYKEYYRMKAKKMDVQVKSKRKRLEKELEQNKVERPVEESKVHFQFGSSGK
RGSSIIEARGISKSFGERVLFDDSHFYIKHGERIGIFGENGCGKTTLIKTILDQIALSKG
ELWKSDSLKIGYLSQDVDELDTQKTALESLGIYDRDEISRVRTIFANIGLKEDKITKPIS
TLSLGERTRVKLVGRLLKNLDLLILDEPTNHLDLASRESLEKTLEEFAGTILVISHDVYF
TNKLCDKLLVFEEKKIKRLEKSLTEYLKKQEPISENKEDLLVLQNKITALLGEISLLTRE
DPKYSEIDQKLTELMKRKRALG
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgactgttatgaaaattagagatataaagaaaagctttggagataaagtgattttagaa
aaagtgaatgcagattttaaaaaaggagaccgtattgggcttgtagggaataatggagca
gggaaaacgacgttagcgaatattatttatggaaaaatccaaccggattcggggacggtt
aacattagtaaacaaggcctgaaaatgggctttttactacaatcgacggaatatacggta
actgattttaaagaggtaatgaatacaagtccaaagagagatcttctcatgcactcgagc
caattaggattgaaaaaactccaggaatgggatggagagcgacttcagcatttaagtggt
ggtgagaagcttaaactatctcttgctaggatatgggcagcaaaaccagatgtccttatt
ttagatgagccaacaaatcatctcgattatcagggggtggagtggttagttggagaaata
aaacaattcgcagggaccgttattattatttcacatgatcgttattttctagatcagacg
gtgagtcaggtactagaattagacaatggaaaagccacggtttataagggtaactactct
gagtatcgtgaagaaaaagaaagacgctttcttgaacaaatgcaccattatgaagtacaa
caaaaacgtaaggaaaaggtcgagcagcaaatcgagaatcttcaaaattggtctgataaa
gcccacaagcaatcgacaaaacaggacggttacaaagagtattaccggatgaaggcaaag
aaaatggatgtccaagtaaagtcgaaaaggaagaggcttgaaaaagagcttgagcagaat
aaagtagagaggccagtagaagagagtaaggtacattttcagtttggatctagtggcaaa
cgtgggagtagtattattgaagctcgtgggatttcgaagtcctttggagaacgagtgctt
tttgatgatagccatttttatataaagcatggtgaacgaatagggatttttggagaaaat
ggctgtgggaaaacaacactaataaaaactatactagaccagattgctttatcgaaggga
gaattgtggaaaagtgattcattgaaaattggctatctaagtcaagatgtagatgaacta
gacactcagaagacggctttagaaagcttgggcatttacgaccgagatgagattagtagg
gttagaacaatttttgcaaacattgggctaaaagaagacaaaatcacgaaacccatctca
actctaagcttaggagagcgaacaagggtaaagcttgtaggtaggctcctaaagaatcta
gacttactaattttggatgagccgacaaatcacttggacctggcaagtcgcgaaagctta
gaaaaaacgctagaagagtttgctggaacaatattggtgatttctcatgatgtgtatttt
acgaacaagttatgtgataaattgttagtctttgaagagaagaaaataaagcgtttggaa
aaaagtctaacagagtacttgaaaaagcaagagcctattagtgagaataaagaagattta
ttagtattacaaaataaaataactgctctactaggtgaaatctcattactaacgagagaa
gatccaaaatacagtgagatagatcagaagttgacagaactaatgaaacggaagcgggct
ttgggataa
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