Litchfieldia suaedae: IM538_11075
Help
Entry
IM538_11075 CDS
T08143
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
csua
Litchfieldia suaedae
Pathway
csua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM538_11075 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csua03019
]
IM538_11075 (pnp)
03016 Transfer RNA biogenesis [BR:
csua03016
]
IM538_11075 (pnp)
Enzymes [BR:
csua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IM538_11075 (pnp)
Messenger RNA biogenesis [BR:
csua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IM538_11075 (pnp)
Transfer RNA biogenesis [BR:
csua03016
]
Prokaryotic type
tRNA degradation factors
IM538_11075 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QOR68603
LinkDB
All DBs
Position
2089887..2091998
Genome browser
AA seq
703 aa
AA seq
DB search
MDQGKQVFSTEWAGRELTVEIGQLAKQASGSVLVRYGETVVLSTSTASKEPKNLDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSV
DQNCSSEMAAMFGSSLSLCVSDIPFEGPIAGVIVGRIDNEFVINPSVEQLEKSDIHLVVA
GTKDAINMVEARADEVPEEVMLEAIMFGHEEIKKLIAFQEKIMEAVGVEKREIQLYEVDK
NLEQSVRELAEKDINSAVQVHEKHAREDAISEVKAAVIAKYEEQEADDQTLKQVKEILGK
LVKEEVRRLITVEKIRPDGRKPDEIRPLSSEIGLLPRTHGSGLFTRGQTQALSICTLGAL
GDVQILDGLGIEESKRFMHHYNFPLFSVGETGPMRGPGRREIGHGALGERALEPVIPSEK
DFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLIKKDEHYTVLT
DIQGMEDHLGDMDFKVAGTSNGVTAIQMDIKIEGLSKQILEEALLQAKTGRMEILESMLR
TINEPKQELSKYAPKILTMKINPDKIRDVIGPSGKQINKIIDETGVKIDIEQDGTVFISS
VDQAMNEKAKKIIEDIVREVEVGQMYLGKVKRIEKFGAFVELFSGKDGLVHISELAEERV
GKVEDVVSIGDEILVKVMEIDKQGRVNLSRKVVLREQKEKQES
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaggaaaacaagtattttccactgagtgggctggtcgtgagcttactgttgaa
ataggccaactagcaaagcaagcaagtggttcagtattagtacgttatggtgaaactgtc
gtattaagtacttcaaccgcttcaaaagaaccaaaaaatttagatttcttcccgttaact
gttaactatgaggaacgcttgtatgcagtgggtaaaatccctggtggttttattaagcgt
gaaggacgacctagtgaaaaagcaattttagctagtagactgattgatcgaccaatacgt
cctttatttgcggatggattccgtaatgaggttcaggtaatcagtattgtcatgagtgtg
gaccaaaactgctcgtctgaaatggcagctatgtttggatcttctttatcactatgtgta
tcggatattccatttgaaggaccgattgctggagtgattgtaggcagaattgacaatgag
tttgttattaatccatctgttgaacaattagaaaaaagtgatattcatttagtagtagca
ggaactaaggatgctattaacatggttgaagctagagcagatgaggttcctgaagaggta
atgcttgaggcaatcatgttcggacatgaagaaataaaaaaattaattgctttccaagaa
aaaattatggaagcagttggtgtagaaaaaagagaaattcaattatatgaagtagacaag
aacttggagcaatcagtacgtgaacttgcagaaaaagatataaacagcgcagttcaggtt
catgagaagcatgctagagaagatgcgattagtgaagtgaaagcagctgtcattgcaaaa
tatgaagaacaagaagcagatgatcaaacgcttaaacaagtaaaagaaattttaggtaaa
cttgttaaagaagaagttcgtcgactaattacggttgagaaaattagaccagatggtaga
aagccggatgaaattcgcccattatcttcagagattggtttattgccacgtacacatggg
tcaggcttatttacaagaggtcaaacacaggctttaagtatttgtaccctaggtgcgtta
ggtgatgttcagattttggacgggcttggaattgaagagtccaagcgttttatgcaccat
tataacttcccgttattcagtgtaggtgaaactggacctatgagaggaccaggtcgtaga
gaaatcggtcacggtgcacttggtgaacgtgctcttgagccagttattccatctgaaaag
gatttcccgtatactatacgtttagtttcagaagtattagagtcaaatggttctacttct
caagcaagtatttgtgcaagtacgttagcaatgatggatgctggggttcctattaaggca
ccagttgctggtattgcaatgggacttattaaaaaggatgaacattatacagttctaacg
gatattcaaggaatggaagaccacctcggcgatatggactttaaagtggccggtacttca
aatggtgtaactgccattcaaatggatatcaaaatagaaggattgtctaaacaaattcta
gaagaagcactactacaagctaaaactggtcgtatggaaattttagaatctatgttacgt
acaatcaatgaaccaaaacaagaattgtctaaatacgctccaaaaatcttaacaatgaaa
attaaccctgataaaattcgtgatgttattggacctagcggtaaacaaatcaataagatt
attgatgaaacaggtgttaaaattgacattgaacaagatggtacagtgttcatttcttca
gtagatcaagcgatgaatgaaaaagcgaagaaaattattgaggatattgtacgtgaagtt
gaagttggacaaatgtatcttggaaaagttaaacgaattgagaaatttggtgcattcgta
gagttatttagtggaaaagatggattagttcatatctctgagcttgctgaagaaagagta
ggcaaagtggaggatgtagtctcaatcggagatgaaattcttgttaaggttatggagatt
gacaaacaaggacgtgtcaacctatctcgaaaggttgtattgcgtgaacaaaaggaaaaa
caagagtcgtaa
DBGET
integrated database retrieval system
