Litchfieldia suaedae: IM538_11885
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Entry
IM538_11885 CDS
T08143
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
csua
Litchfieldia suaedae
Pathway
csua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
IM538_11885
09124 Replication and repair
03420 Nucleotide excision repair
IM538_11885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csua03021
]
IM538_11885
03036 Chromosome and associated proteins [BR:
csua03036
]
IM538_11885
03400 DNA repair and recombination proteins [BR:
csua03400
]
IM538_11885
Enzymes [BR:
csua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
IM538_11885
Transcription machinery [BR:
csua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
IM538_11885
Chromosome and associated proteins [BR:
csua03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
IM538_11885
DNA repair and recombination proteins [BR:
csua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
IM538_11885
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Helicase_C
PDDEXK_1
CCDC89
GWxTD_dom
ResIII
PhoH
TP_0454_N
YpoC
Motif
Other DBs
NCBI-ProteinID:
QOR64577
LinkDB
All DBs
Position
complement(2256847..2259129)
Genome browser
AA seq
760 aa
AA seq
DB search
MLPEIKLSVRTLVEYVYRSGSIDNKFRTTTTLTEGTKAHKAIQSTYNETDQKEVFLKTEI
EYEYMLYKIEGRCDGLIFRNDDVLIDEIKSTTKDLSLINEETFPVHWAQAIVYAYIYAKD
HEHKEMSVQLTYLHVVTEEQKKFIKRFTFQDLERFVIKLVRQYAPYASLMYKHRVQRDQS
IKDLTFPFSTYREGQRTLAGAIYKTIAEEKNIFANAPTGIGKTISTIFPTVKAIGEGKLE
RLFYLTAKTITRQTAEEAFSLMKTKGLCMSAVTITAKDKVCFKEETICQKEYCEFANGYY
DRLNEAFLDIFSQETFISRATIEEYARRHTLCPFEFSLDLAFVADAIICDYNYIFDPKVA
LKRFFEEHKRQTALLIDEAHNLVDRARDMFSAELQKSSFLTLKRDYKGTNLYESVTQLNK
YFIELKKKCAEKGHLVLKDVQEELADMLEEFTHVAESELLHPTKSQDQQLLLDTYFAATG
FVRISKLFDERFVFYVSTEKNEVQIKLFCLDPSYLLQQISKKFRATVYFSATLLPFQYFM
DMLGGTTEDYTISIPSPFLKEQTDVFIQPLSTRYHDRDHSQSHIVNMLSNLVKERKGNYL
IFFPSYQYLKSVFEDFTANYPEIRSILQHNNMGEDEREHFLEEFKEDGTSTLVGFAVLGG
IFSEGVDLKGNRLNGVVVVGVGLPQLCLERNIMKDYFHSTGKNGYDYAYTYPGMNKVLQA
GGRLIRSEADTGVIVLVDDRFLTQKYQGLFPVEWRDFETI
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgctacccgaaataaagctctctgtacgcacattggttgaatatgtttatcgtagtgga
agcattgataacaaatttcgaactacgacaactcttactgaaggaacaaaagcacataag
gcgattcaaagtacgtataatgaaacagatcaaaaggaagtgtttcttaaaacggaaatc
gaatatgaatatatgctttataaaattgagggccgctgtgatgggttaatttttcgtaat
gatgatgttctcattgacgaaattaaatctaccacaaaggatttgagtctaattaatgag
gagacattcccagtccactgggctcaggctatcgtttatgcttatatttatgctaaagac
catgagcacaaagaaatgagtgttcaattaacttatcttcatgtggttacagaagagcaa
aagaaatttattaaacggtttacctttcaagatctcgagcggtttgtaatcaaacttgtg
aggcaatatgcaccttatgcatcgcttatgtacaagcaccgagtacaaagagatcaaagt
ataaaagatttaacatttcctttttctacttatcgtgagggtcaacgtactctggcaggt
gctatttataaaacaatcgcagaggagaaaaatatatttgcaaatgcacctactggtatt
ggtaaaaccatttctactatttttccaactgttaaagcgattggtgaaggaaaactcgag
agactattttatttaacagcaaaaacgattacaagacaaacggctgaagaagctttttcc
cttatgaaaaccaagggtctttgtatgagtgcagtaactattactgcaaaggataaagta
tgctttaaagaagaaaccatatgtcagaaggaatattgcgagtttgcaaatggttattat
gatcggcttaatgaagcttttttggatatattttctcaagaaacgtttattagccgtgct
acaatcgaagaatatgcgagaaggcatacgctatgtccatttgaattctctttagatttg
gcctttgtagcagatgcaatcatttgtgattacaattatatttttgacccgaaagtagca
ctaaagcgattttttgaagaacataagagacaaactgcattattaatagatgaagctcat
aatctagttgatcgtgctcgggatatgttttcagctgaattacaaaaatctagctttcta
acattaaaacgggactataaaggaacaaatttgtacgaatctgttactcaactaaataaa
tattttattgaactaaagaaaaagtgtgcagagaaaggacatctagtcttgaaggatgta
caagaggaactggcagacatgcttgaagaattcacacatgtggctgaatcagaattattg
catccaacaaaatcacaagatcagcaactgctattggatacctattttgcggcaacaggg
tttgtcagaatatcaaaacttttcgacgaaaggtttgtattctatgtgagtactgaaaaa
aatgaggttcaaattaaattattttgtttggacccttcttatctcttgcagcagattagt
aaaaagtttcgagcaactgtctatttttctgccacactattaccatttcaatattttatg
gatatgcttggtggtacgacagaggattatactatttcgattccttcaccatttttgaaa
gaacaaacagacgtattcattcagcctttatccactcgatatcatgacagagaccattca
cagtcacatattgtaaacatgttatcaaatcttgtaaaagaacgaaaaggtaactatctg
attttctttccatcctatcaatatttgaaaagtgtatttgaagactttacagcaaactat
cctgaaatccgttccatcctccagcataacaatatgggggaggacgaacgtgaacatttt
ttagaggagtttaaagaagatggtacaagtacactcgttggctttgctgtattaggtggt
attttctctgaaggtgtggacttaaaaggtaatagattgaatggtgttgttgttgttgga
gtagggttaccacagctttgtctagaacgaaatataatgaaagactattttcactcaact
ggaaaaaacggatacgactacgcctatacctacccaggaatgaacaaagtgctacaagca
ggaggtcgactaatcaggtctgaagcagacacgggagtcattgtattagttgatgaccgc
tttctaactcagaagtatcagggacttttcccagtcgagtggagggattttgaaactatt
taa
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