Litchfieldia suaedae: IM538_15945
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Entry
IM538_15945 CDS
T08143
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csua
Litchfieldia suaedae
Pathway
csua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM538_15945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csua03019
]
IM538_15945
03400 DNA repair and recombination proteins [BR:
csua03400
]
IM538_15945
Enzymes [BR:
csua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IM538_15945
Messenger RNA biogenesis [BR:
csua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IM538_15945
DNA repair and recombination proteins [BR:
csua03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IM538_15945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QOR65305
LinkDB
All DBs
Position
complement(2982118..2983647)
Genome browser
AA seq
509 aa
AA seq
DB search
MELLEKVLKRKFNYSSFRFGQREIIQDVLEGHDVLAMLPTGGGKSICYQLPSYIMGGTTL
IISPLLSLMEDQVQQLKKNGEKDVIALNSFLTFYEKQSAVKDLRKYRFIFTSPEMLQSPL
VITALKRCRISLFVVDEAHCISQWGHDFRPDYSKLGDIKRTLGNPPCLALTATATDQVIE
DISSMLLLTKEKRHIHSVDRKNIAIVVKKTHSLDDKILTLLDRVQKLQGPGIIYFSSRLW
AENIANYLLEKGIKNVAYYHGGMEQEQRMLIQQQFLSNQLEVICCTSAFGMGINKPNIRY
VIHFHLPSQLESYIQEIGRAGRDGNSSIAILLYSPNDEEIPEQLIQYELPSTQSIRTILS
CLNEMLKNNRNLHITKDIEEDIINKADVNENYWRFIKHQLKEFNILDDQFNTEEIAVEEV
TNKISRIITQRNDLKSEKLIFMKKLVFSNLCRREHILRYFGEEPLDKPLICCDICSEDFR
TFETQNKQSLNKTITDWREELGRILLKGE
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggaactacttgaaaaggtattaaaaagaaaatttaattacagttcttttaggtttggt
cagagggagattattcaagatgtactagaaggacacgatgttttagctatgcttccaact
gggggcggtaaatcaatttgttatcaacttcctagttatatcatgggagggacaacctta
atcatttcaccattattatccctaatggaagatcaggttcaacagctaaagaaaaatgga
gaaaaagatgttattgctttaaatagtttcctgacattttatgaaaaacagagcgctgtc
aaagaccttcgcaaatatcgttttatttttacatcacctgagatgttacagtcacctttg
gtaatcacagctcttaagaggtgtaggatatccttatttgttgttgacgaagctcattgt
atttcacaatggggacatgatttcaggccagattactctaaactgggagatatcaagcgt
actttaggtaatcctccttgtttagctttaaccgctacagcaacggatcaagttattgaa
gatatctcatccatgttactgttaactaaagaaaaaagacacatccattcagttgatcgt
aaaaatatagcaattgtggtgaagaaaactcattctttagatgataaaattttgacctta
cttgatagagttcagaaacttcagggacctggaattatatatttctcaagtagactttgg
gccgagaatattgcgaattacttgttggaaaaagggataaagaatgttgcttattaccat
ggaggaatggagcaagagcagcgcatgctaattcaacaacagtttcttagtaatcagctt
gaagtaatctgttgtactagtgcatttggaatgggaataaacaaaccgaatatacgttac
gtcatacactttcatctaccttcgcaacttgaatcttatatacaagagatagggcgtgct
gggagagatggaaattcaagtatcgctattctattgtatagtccaaatgatgaagaaatc
cctgagcaacttattcagtatgaactcccttcaactcaatcaatacgtacaattctaagc
tgtttaaatgaaatgctaaaaaataatagaaatttacacattacgaaagatattgaagaa
gatataattaataaagcagatgtaaacgagaactattggagatttattaaacatcaattg
aaggaatttaacattctcgatgaccaattcaatacggaggaaattgcagttgaagaggtc
accaataaaatttcccggattattacacaaagaaatgaccttaagagtgaaaaattaatt
ttcatgaaaaaattggtgttttctaatttatgtagaagggaacatattctaagatacttt
ggagaagagcctttagataaaccattaatttgttgtgatatatgttcggaagactttcgg
acatttgaaacgcaaaataaacaaagtctaaataaaaccattacggattggagagaagag
cttggtcgcattctcttaaaaggtgagtga
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