Litchfieldia suaedae: IM538_18725
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Entry
IM538_18725 CDS
T08143
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
csua
Litchfieldia suaedae
Pathway
csua03030
DNA replication
csua03430
Mismatch repair
csua03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IM538_18725 (dnaE)
03430 Mismatch repair
IM538_18725 (dnaE)
03440 Homologous recombination
IM538_18725 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csua03032
]
IM538_18725 (dnaE)
03400 DNA repair and recombination proteins [BR:
csua03400
]
IM538_18725 (dnaE)
Enzymes [BR:
csua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IM538_18725 (dnaE)
DNA replication proteins [BR:
csua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IM538_18725 (dnaE)
DNA repair and recombination proteins [BR:
csua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IM538_18725 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
FKBP26_IF
DNA_pol_IIIA_C
HROB
DUF1444
Motif
Other DBs
NCBI-ProteinID:
QOR65821
LinkDB
All DBs
Position
complement(3523400..3526792)
Genome browser
AA seq
1130 aa
AA seq
DB search
MSFVHLQVRSAYSLLNSPSKIEDLVSKAKALGYKALALTDENVMYGAVPFFKECKKQNIK
PIIGLTVSIIGDQLDSEETLTQAFPLVLLAINNEGYQNLLKISSIVQSKSKSGMPKKWLP
YYSKGLLAISPGRVGEIEQSILNENDDVAKRVINTYKNIFGLENFYLSIQDHGLNEQQML
NKRLMELSKELMVKLVATNDVYYLNREDSFAHECLLAIKNSNKLSDDDRIKLPSDQYYMK
PISNMVELFRSIPEILEETLNISTRCNVEIELGKIALPKYPTPANESSSDYLEKICLEGL
KVRFEGDIRLNEYLERLTYELDVIKSMKFSDYFLIVWDFMKFAHSNGILTGPGRGSAAGS
LVAYVLNITDVDPIKYQLLFERFLNPERISMPDIDIDFPDNRRDEVIAYVSKKYGQLHVA
QIITFGTLAARAVLRDVGRVMGISPKEADYISKQIPSSLGITLKQAFKESNSLREYISTS
ELGKRLYETAIKLEGLPRHTSTHAAGVVISEEPLTNLVPVQEGHNETYLTQYSMDILEEL
GLLKMDFLGLRNLTILDNILSYIRKDTGKKIQLNNIPFNDTKTYELLSSGDTTGIFQLES
GGMRKVLENLEPTNIEDIVAVNALYRPGPMENIPTYIERKHGREQIVYPHEDLKEILHTT
FGVIVYQEQIMQIAATMAGFSLGEADLLRRAVSKKKKEVLDEEREHFVKGCLNKGYTLET
SHSTYDLIVRFANYGFNRSHAVAYSIISYQLAYLKANYPLYFTAALLTSVIGNEDKIFQY
SREAKQKGIKLLPPSINSSSFPFTVEKGSIRFSLAAIKGVGVAALREILQVRKQKRFSDL
FDFCMRTSIKNVNRKTLEMLISSGAFDEFGEDRANLLASLDLAMEHAELVRPSEDGQFDL
FMNDEFNLKPKYIKVDPFSPEAKLKFEKEALGFYLSSHPTTPYEPLFKKMIAKPIVELAP
SKFDSSVKVGVYITNERTIRTKKGEVMAFLTLSDESGEIEAVTFPTIYRKFSTKLQKGTV
LLVEGKVELRDQRLQLIVKNVLSIDELKSMKESSSSLYLKIEPIHKEGSTIQKIHAILKK
HHGSTPVIIYYVDEKKTYKLQEDSWINSTEECLSRLKELVGEKNVVLKKH
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctttgtacatcttcaagttagaagtgcgtatagtttattaaatagtccgtcaaaa
atagaagaccttgtaagtaaagcaaaggcacttggttataaggcactcgctttaacagat
gaaaatgtgatgtacggagcagtccctttttttaaggagtgtaaaaaacaaaacattaaa
ccgattattggattaacggtgtccattattggtgatcagttagatagtgaagaaacgcta
acacaagcttttcctctagtattgcttgctatcaacaatgaggggtaccaaaacctttta
aaaattagtagtattgttcaatcaaaatcgaaatctggtatgcctaagaagtggctacca
tattatagtaaaggtttattagccatttcacctggacgagtaggtgaaattgaacaatcc
atcttaaatgaaaatgatgatgtagctaaaagagtaatcaatacctataagaatatcttt
ggtttagagaatttctatttatcgattcaggaccatggattaaacgaacagcaaatgtta
aataaaagactaatggaactttctaaggagttaatggtaaagcttgtagcaacaaatgat
gtctattatttaaatagagaggactcttttgcacatgagtgtctcttagcaattaagaat
agtaataaactttcagatgatgatcgaattaaactacctagtgaccaatattacatgaaa
cctatatccaatatggtagagttatttcggagtattccggagatacttgaagaaaccctg
aatatttctacaagatgtaatgtagaaatagagttaggaaaaatagcattaccgaagtat
cctactccagcgaatgaaagttcgagtgattacctagaaaaaatatgtttagagggacta
aaggtaagattcgaaggggatatccgtttaaatgagtatctggagagacttacatatgaa
ctagatgttattaaatctatgaagtttagcgattactttttaattgtttgggatttcatg
aagtttgctcattcaaatgggatattaactggacctggtaggggttctgcagcagggtct
ttagttgcttatgtgcttaatattacagatgtggatcctataaagtatcagttattattt
gaaagatttttaaatccagagagaatctccatgcctgatattgatattgattttcctgac
aatcgacgagatgaagtcatagcctatgtttctaaaaaatatggtcaactacatgtggct
caaattattacatttggaacattagcggcaagggcagttcttcgagatgttggacgagtt
atgggaatttcaccgaaggaagccgattatatatcaaagcaaattccatcaagtttaggt
attacactaaaacaggcatttaaagaatcaaactctttacgcgagtatattagtacttca
gaacttggtaaaagactatatgagactgccataaaactagaaggtcttcctagacatacg
tccacacatgctgcaggtgttgttattagtgaagaaccgcttactaacttagtgccagtt
caagagggacacaacgaaacctatcttacgcaatattcaatggacatccttgaggaatta
gggttgttaaaaatggatttcctcggcttgcgtaatttaacgattttggacaatattcta
tcctacattcgaaaagatacagggaaaaagatccaattaaacaatataccttttaatgat
actaaaacatacgaactattgagtagcggggatactactggaatttttcaattggaatca
ggtggtatgagaaaagtacttgaaaatcttgaaccgactaacatagaagacattgtagct
gtaaatgcactctatcgtcctggtccaatggagaatattccaacttatatagaacgaaaa
catgggcgtgaacagattgtctatcctcatgaagacttgaaagaaatattacacactact
tttggtgtaattgtttaccaggaacaaatcatgcaaattgcagctactatggctggtttt
tcattgggtgaagctgatctattacgaagggctgttagcaaaaagaagaaagaagttctt
gacgaagaaagggaacactttgtaaagggctgcttaaataagggttataccctagaaaca
tcccattcaacctatgatctaattgtcagatttgcaaattatggttttaataggagtcat
gctgttgcatacagtatcatttcttatcaattagcctatttaaaagcaaactacccactc
tattttacggcagcgttacttacaagtgtgataggtaatgaagataaaatctttcagtac
agtagagaagcaaaacaaaaaggtattaaactactacctccctctattaacagtagtagt
tttccatttacagtggagaaaggttctattcgatttagtttagcagcaattaaaggagta
ggagttgctgcactaagagagatactacaggtaagaaaacaaaaaagatttagtgatctt
tttgatttctgtatgagaacatcgataaaaaatgtgaatagaaaaacacttgaaatgtta
atttcttcaggtgcttttgacgaatttggggaggatcgcgcaaatttattagcatcattg
gatttggcgatggaacatgctgaattagttcgtcctagtgaagatggacaattcgaccta
tttatgaatgatgaatttaatctaaagcctaaatatataaaagttgatccgttttctccg
gaagctaaactgaagtttgaaaaagaagcacttggattctatttatcaagtcatcctact
actccttacgaaccactatttaaaaagatgattgcgaaaccaattgtggagctagctcca
tccaaatttgattcatctgtgaaggttggagtttatataacaaatgaacgaaccattcga
acaaaaaaaggggaggtcatggctttcttaacactcagtgatgaatcaggagagattgaa
gccgttactttcccaactatatatcgaaagttttctaccaagctacaaaaaggtacagta
ctactagttgaaggcaaggttgagttaagggatcaaaggttacagttaatcgtaaaaaat
gtattatctattgatgaactaaagtcaatgaaagaaagctcatcctcgttgtatcttaaa
atagaacccattcataaagaaggttctactatacaaaaaatacatgctattttaaaaaag
caccatggttcaacgcctgtcattatctactatgtggatgagaaaaaaacatacaagcta
caggaggatagttggataaatagtacggaagagtgccttagtaggctaaaggaattagta
ggagaaaaaaatgttgtattaaaaaaacattaa
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integrated database retrieval system
