Litchfieldia suaedae: IM538_20760
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Entry
IM538_20760 CDS
T08143
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
csua
Litchfieldia suaedae
Pathway
csua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM538_20760 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csua03019
]
IM538_20760 (rnr)
03016 Transfer RNA biogenesis [BR:
csua03016
]
IM538_20760 (rnr)
Enzymes [BR:
csua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IM538_20760 (rnr)
Messenger RNA biogenesis [BR:
csua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IM538_20760 (rnr)
Transfer RNA biogenesis [BR:
csua03016
]
Prokaryotic type
tRNA degradation factors
IM538_20760 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_RNR_1st
S1_RRP5
OB_Dis3
RNase_II_C_S1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
QOR66171
LinkDB
All DBs
Position
complement(3912694..3915021)
Genome browser
AA seq
775 aa
AA seq
DB search
MDQEIKQHIDKLLSFMKEEAYKPLTVQELEEAFGIQDSSEFKEFVKALVVMEEKGYVVRT
RSNRYGLPEKMNLIRGKLSGHAKGFAFVLPEDKTMDDVFVPPPDMNNAMHGDTVLVRINT
EASGTRKEGTIVRIIERGVTEIVGTYTESRNFGFVIPDDKKIANDIFIPKEATNGAAEGH
KVVVKLTTYPEGRMSAEGEIIQILGHKNDPGVDIISVIHKHGLPQDFPKEALDQAISVPD
TINEAEIKNRKDLRDQVIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVTHYVTEGS
PIDKEASDRGTSIYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCDMEINSEGAVVKHEI
FQSVIKTTERMTYSDVNKILVDKDEEVRGRYDSLVPMFEEMEVLAQILREKRMKRGAIDF
DFKEAKVLVDDEGKPTDVVLRERSVAEKLIEEFMLAANETVAEHFHWMNVPFIYRIHEDP
NEEKLRRFLEFITNFGYVVKGTGNSIHPRALQEIIESVQGQPEEMVVSTIMLRSMKQAKY
DPESLGHFGLSTDYYTHFTSPIRRYPDLIVHRLIRTYLINGELDSGTQAKWKDKLAGIAE
HSSNMERRAVEAERETDSMKKAEYMLDKIGEEYDGIISSVTNFGMFVELPNTIEGLVHVS
YLTDDYYRYDERHLAMIGERTGNVFRIGDEITVRVVNVNKDERSIDFEVVGMKGSRRPLS
KEAPKVIRADRGPSRRKKTDTKTSEKQGDPNKPPKKKKKFFDNVPKQKSRKRKNK
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagaaattaaacagcatatagataagcttctttcgttcatgaaagaagaggca
tacaagccattaactgttcaagaattagaagaggcatttggtattcaagattcatctgag
tttaaagagtttgttaaagcacttgttgttatggaagaaaaggggtacgtcgttagaaca
agaagcaatcgttatggacttcccgaaaaaatgaacctcatccgtggtaaattatctgga
catgctaaagggtttgctttcgtgttacctgaagataaaacaatggacgatgtgtttgtt
ccaccacctgatatgaacaatgcgatgcatggtgatacggttcttgttcgaataaacaca
gaagcttctggaactcgtaaagaaggtaccattgttagaattattgaacgtggtgtaaca
gaaattgtagggacgtatacagagagtagaaactttgggtttgttatcccagatgacaag
aaaatagccaatgatatttttatcccaaaggaagcaacaaatggtgctgctgaaggtcat
aaggtcgttgttaagctaacaacttaccctgaaggtcgaatgagtgctgagggtgaaatt
attcaaatccttggccataaaaatgatcctggtgtagatattatatctgttatacataag
catggtttacctcaggacttcccaaaagaggcattagatcaagcaataagtgtacctgat
acaattaatgaggctgaaattaaaaacagaaaagatcttcgtgatcaagtgattgttacg
attgatggagcagatgcgaaggacttagatgacgctgtaactgttacgaagcttgaaaac
ggcaactacaaactaggagttcatattgctgatgttactcattatgttactgagggttca
ccaattgacaaagaagcgagtgaccgtggaacaagtatttacttggtagaccgagtgata
ccaatgattcctcaccgtctgtcaaatgggatttgctcgttaaatccgcaagtcgatcga
ttaacactttcttgtgatatggaaattaatagtgaaggtgcagttgttaaacatgaaatt
tttcaaagtgtaattaagacaactgagcgaatgacttattcagatgtgaacaaaattctt
gttgataaagatgaagaagtcagaggacgctatgattcactcgtgccaatgtttgaggaa
atggaagtacttgcacaaatccttcgtgaaaaaaggatgaaacgcggtgcgattgacttt
gattttaaagaagcaaaagtacttgtagatgatgaaggaaagccaactgatgtggtacta
cgtgaacgttctgtggctgaaaagcttattgaagaattcatgttagctgctaatgaaaca
gtagctgagcattttcattggatgaatgtaccgttcatttaccgtatccatgaagaccct
aatgaagagaagttaagaaggttcttagagttcattaccaactttggctatgttgtaaaa
ggtacaggaaattcaattcatccacgtgctttacaggaaattattgaatcagttcaaggg
caaccagaagaaatggttgtatcaaccattatgcttcgctcgatgaaacaagcaaaatat
gatccagagagcttaggtcactttgggttatcaacagattactatacacatttcacctca
ccgatacgacgttatccagatttaatcgttcaccgtttaattagaacgtacttaataaat
ggtgaacttgatagtggtacgcaagcaaaatggaaagataaattagcaggtatcgcagag
cactcttcgaatatggagcgtcgtgcagttgaagcagagcgtgaaacggatagcatgaag
aaagcagaatacatgcttgataagattggtgaagaatatgatggaattattagctctgta
acaaacttcggaatgttcgttgagcttccaaatacaattgaagggttagttcacgttagt
tatttaacggatgattattatcgttatgatgagcgtcatttagcgatgattggtgaacga
actggaaatgtatttagaatcggagacgagattacagttcgtgttgtaaatgttaataaa
gatgagcgatccattgattttgaagtagtaggcatgaaaggatcacgtcgtccactttca
aaagaagctccgaaagttattagagccgatagaggaccaagtcgtcgtaaaaagacagac
acaaaaacttctgaaaaacaaggcgatcctaataagccaccaaagaaaaagaaaaagttt
tttgataatgtaccaaaacaaaagagcagaaagcgtaagaacaaataa
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