Cytobacillus suaedae: IM538_20815
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Entry
IM538_20815 CDS
T08143
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
csua
Cytobacillus suaedae
Pathway
csua02020
Two-component system
csua02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IM538_20815 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IM538_20815 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csua03021
]
IM538_20815 (rpoN)
Transcription machinery [BR:
csua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IM538_20815 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
Xre-like-HTH
HTH_23
HTH_3
HTH_21
HrcA_DNA-bdg
HTH_Crp_2
LacI
HTH_Tnp_ISL3
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QOR66181
LinkDB
All DBs
Position
complement(3924516..3925832)
Genome browser
AA seq
438 aa
AA seq
DB search
MNMRVGLFQQQSLKLTMTKELTQAITLLQYSALELSEFLQEQTLENPLIEISGAEANLYS
KKKAPLKRAEKLNPLDFVDLHQKTLHQYLGEQISLIKLEPYQRKITEYIIDLVDHNGYLT
MDCNEIAENLLIPKELVINQLSLIQSLDPAGVGARSVKECLLLQLERLPNRSQLAEDIIR
NHFDLFASKTWREITKHTSYDLKAIQAVSDLIVTLNPRPGNAFYEGKQDYITPDLSVTVE
NGEIEINIHDEFLPKVSLNLQYYKSLESVNDAQALSYLKEKAQQCQWIIKSLEQRKQTIL
LVMNEIIQRQPDYFLKGTTYLKPLTMKEVADAIDVHESTVSRTCRDKYVQTPYGVVEMKS
FFSSAIQTANSGEDTSSTGVKEIIEKIVSAENKIKPLSDQKIVEILESEHNIVVSRRTIA
KYRDQLGILSSSLRKRYD
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgagagtagggttatttcaacaacagtcattaaagttaacaatgacaaaagaa
ttaacgcaagcaatcacgttactacaatattccgcactcgagctgtctgaatttttacag
gagcagacccttgaaaacccactaattgaaatttccggcgcagaagccaatttatatagt
aagaaaaaagcaccactaaaaagagcagaaaaattgaatccattggattttgttgactta
caccagaaaacgttacatcaatatttaggtgaacagatttctttaattaaactagagcca
tatcagcgtaaaatcacagaatatatcattgatctagtagaccataatggctatttaaca
atggactgtaatgagattgctgaaaatcttcttattcctaaggagttagtgattaatcag
ctaagtttaattcaaagtttagatcccgcaggagttggagctagaagtgtgaaggaatgt
ttactacttcaacttgagaggctacccaatagaagccaattggcggaagatataataaga
aatcactttgacttatttgcctccaaaacttggagagagattacgaaacacacttcttat
gatttaaaagcaatccaggcggttagtgaccttatcgtaacactgaaccctcggccaggt
aatgccttttatgaagggaaacaagattacattactcctgacctttctgttacagttgaa
aatggagaaattgaaataaacatacatgatgagtttctacctaaggtctcacttaatctg
cagtactataaatcgctagaaagtgtgaatgatgcacaagctctttcatacttaaaagaa
aaggcccagcaatgtcaatggattataaaaagccttgagcagcggaaacaaactattttg
cttgttatgaatgaaatcattcaacgtcaacccgattattttctaaaaggcacaacctac
ttaaaaccccttacgatgaaggaagttgcagacgcgattgatgttcatgaatccactgtt
agccgaacatgtcgcgataaatatgttcaaacaccctatggcgttgtggaaatgaagtct
ttttttagcagtgcaatacaaacagctaattcaggtgaagatacatcttcaacaggggtt
aaagaaataattgaaaagattgtatcagcagaaaataaaatcaaaccattatcagaccag
aaaattgtagaaatactagaaagtgaacataatattgtggtctcaagacgtacaatcgca
aaatatagggatcaactcggaattctttcttcctcacttcgaaaaagatatgactaa
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integrated database retrieval system
