Litchfieldia suaedae: IM538_20995
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Entry
IM538_20995 CDS
T08143
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
csua
Litchfieldia suaedae
Pathway
csua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IM538_20995 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csua03400
]
IM538_20995 (uvrB)
DNA repair and recombination proteins [BR:
csua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IM538_20995 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IM538_20995 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
UvrD-helicase
AAA
AAA_7
AAA_22
AAA_19
P-loop_SecA
AAA_30
UB2H
AAA_16
DUF87
UFL1
AAA_5
TrwB_AAD_bind
AAA_25
HEM4
Motif
Other DBs
NCBI-ProteinID:
QOR66211
LinkDB
All DBs
Position
complement(3958516..3960495)
Genome browser
AA seq
659 aa
AA seq
DB search
MKDQFELVSKYSPQGDQPRAIKQIIEGINAGKKHQTLLGATGTGKTFTISNVIKELNRPT
LIIAHNKTLAGQLYSEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSVNDEID
KLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYKELVVSLRVGLELERNQLLHKLVDVQ
YERNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTREEKMQVAIKNIEIELEERLKELRDNGKLLEAQRLEQRTKYDLEMMREM
GFCSGVENYSRHLTLRPSGSTPYTLMDFFPRDLLIVIDESHVTIPQIRGMFNGDQARKQV
LVDHGFRLPSAMDNRPLRFEEFENHIDQIVYVSATPGPYELEKTPEVVQQIIRPTGLLDP
PIEVRPIQGQIDDLLGEIQARVEKNERVLITTLTKKMSEDLTNYLKDIGIKVNYLHSEIK
TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNANGRVIMYADKMTNSMEIAIRETQRRREIQEEYNKKHGITPQTIKKDIHNLIKATH
AAEVTEDYDAAPKLSNLTKKEREKVMKDLEIEMKEAAKALDFERAAELRDLLLELKAEG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggatcaatttgagttagtctcaaagtattcaccacaaggcgatcagccaagagca
atcaaacaaatcatcgaaggtatcaatgctgggaagaaacatcaaacccttttaggggct
acaggaacgggaaagactttcactatttcaaatgtaatcaaagaattaaatagaccaaca
ctaatcattgcccataacaaaacattagcgggacagctctatagcgaatttaaagacttc
ttcccgaataatgcggttgaatactttgttagttactacgattactatcaacctgaggct
tatgttccatcgtctgatacatttattgaaaaagattcgagtgtcaatgatgagattgat
aaattacgtcactcagcgacgtcatcattattcgaacgtagagacgtcatcatcattgcg
agtgtatcttgtatttacggcttaggttcaccagaagaatacaaagagttagtcgtttct
ctaagagtcggattggaacttgaacgcaaccaattattacataagcttgtcgacgttcaa
tatgaacgaaatgatatagatttccgtcgtggaactttccgtgtacgtggcgatgtagtc
gagattttccctgcatctcgagacgagcactgtatccgagttgaattctttggagatgaa
atcgagagaattcgagaagtggatgcactaactggagaaattcttggagaccgtgaccat
gttgcgattttcccggcatcccacttcgtaacacgtgaagaaaaaatgcaagttgctata
aaaaatattgaaattgaactcgaagaacggttaaaagaacttcgtgataacggaaaatta
cttgaagcacaacgattagagcaacggacaaagtatgaccttgagatgatgcgtgaaatg
ggcttttgctcaggagtcgagaactattcacgtcacctaactttaagaccatctggatct
actccatatactctaatggacttctttccaagagatttactaatcgttatagatgaatca
cacgtaacaatcccacaaattcgtgggatgtttaacggtgaccaggcaaggaaacaggta
ctagtagatcatggtttccgtttaccatctgccatggacaaccgcccactgcgatttgaa
gaatttgaaaatcatattgaccaaattgtctatgtatcagcaacacctggtccatacgag
cttgagaagacacctgaggttgtgcagcaaatcattcgaccaactggattacttgatcca
ccaattgaagttcgtccaattcaaggtcagattgatgacctattaggagaaattcaagca
agggttgagaaaaacgaacgtgtgttaataacgacattgacgaaaaaaatgtctgaggac
ttaacgaattaccttaaagacattggtataaaggtaaactatttacactctgagattaaa
acattagaacgtattgaaattattcgagatctacgtttaggaaaatatgatgttttagtt
ggaatcaacttattaagagaaggtcttgatatccctgaggtttcacttgtagctatttta
gatgcagacaaagaaggcttcctacgctctgagagatcacttattcaaacaattggtcgt
gcagcgcgtaatgcaaacggtagggtcattatgtatgcagataagatgacgaactcgatg
gaaattgcaattagagaaacacagcgtcgtagagaaatacaagaagaatacaataaaaag
cacggaatcacaccacagacaattaagaaggatatccataaccttattaaagctacacat
gctgctgaggttacagaagactatgatgcagctccaaagctatcaaatttaacgaaaaaa
gaacgagaaaaagtaatgaaggatttagagatagaaatgaaagaggcagccaaagcgctt
gattttgaacgagcagcagagcttcgtgatcttctattagagctaaaggcggaaggatga
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