Litchfieldia suaedae: IM538_23000
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Entry
IM538_23000 CDS
T08143
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csua
Litchfieldia suaedae
Pathway
csua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM538_23000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csua03019
]
IM538_23000
03009 Ribosome biogenesis [BR:
csua03009
]
IM538_23000
Enzymes [BR:
csua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IM538_23000
Messenger RNA biogenesis [BR:
csua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IM538_23000
Ribosome biogenesis [BR:
csua03009
]
Prokaryotic type
rRNA helicases
IM538_23000
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QOR66588
LinkDB
All DBs
Position
complement(4409931..4411541)
Genome browser
AA seq
536 aa
AA seq
DB search
MQGFLELGIRKELDRVLKKNGILEPTSIQEQAIPEVLQGKDVIAQAQTGTGKTLAFILPI
LEKVNPANKEVQALIVTPTRELALQITAEVNKLLEKMEDIHILAVYGGQDVDRQVKKLTR
GIQIVIATPGRLLDHIRRETVDLSTVSTLVLDEADQMLHMGFLPEVEEIIYETLSTRQTL
LFSATMPDQVKSLAKRYMKDPVDIKVKAKQLTVTGIKQLVVETTDRAKQAALFKLLDEYQ
PFLAIIFCRTKRRAGKLNEAMKANGYNSDELHGDLSQAKREHVMKRFREAQMQFLVATDV
AARGLDVTGVTHVFNYDIPEDVESYIHRIGRTGRAGEEGVAVTFVAPKDRNYLTMIEKEI
KITLEKQSVELSNGRLSNETRDEFESRGSNPEGDRKRSFNRQTGDRQKKSTRPGRPNSRE
AGRDRRSGRASSESSPKTSRMDYQRADGDSSRTESKRPESGRSSRAESKRPDSGRSSRAE
PKRPDSGRSSRTESKRPDSGRNSRTGSRSQSVMGRSARGKSSGQSGAQGRGRSRSK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggttttttagaattaggtattaggaaagagttagatcgtgtattaaagaagaat
gggattttggagccaacttcgattcaggagcaagcgattccggaggtgcttcaaggtaag
gacgtaattgcgcaagcacaaacagggacaggtaaaacattggcgtttattttacctatt
ttagagaaggtaaatccagcaaacaaagaggttcaggctctaatcgttactccgacaaga
gaacttgctctgcagataacagctgaagtgaataagttattggaaaaaatggaggacata
catattcttgcggtgtatggtggtcaagatgtggatcgccaggtgaaaaaactaactaga
gggattcaaattgtcattgcaactcctggtagacttttagatcatatacgtagagagaca
gtggatttatctactgtgtcgacacttgtattagatgaagcagatcaaatgctacatatg
ggctttttacctgaggtcgaagagattatttatgaaactctatcaacgagacaaactctt
ttattctccgcaacaatgcctgaccaagttaagtcacttgcaaaacgatatatgaaagat
ccggtagatataaaagtgaaggcaaaacagttaacggtaactggtattaagcagctagtg
gttgaaactaccgatcgtgcaaagcaggccgcactctttaagctgttagatgaatatcag
ccgtttttagcgattattttctgtcgtacaaaaagaagagctggtaagttaaatgaagcc
atgaaggctaatggttataattctgatgaattacatggcgatctttcacaggcaaagcgt
gagcatgtaatgaagcgttttagagaagcgcaaatgcagtttttagttgcaaccgatgtt
gctgcacgtggcttagacgtgacaggagttacacatgtatttaattacgatattccagaa
gatgttgaaagctacattcatcgaattggccgtaccggtagagcgggtgaagagggcgta
gcggttacgtttgtggcacctaaggaccgaaattatttaacaatgattgaaaaagaaatt
aaaatcactctcgaaaagcaaagtgtagaattatctaatggacgtctctcaaatgaaact
agagatgaatttgagagtagagggagtaacccagagggagatagaaagcggtcattcaat
agacaaactggtgataggcagaaaaaatcaaccagaccgggcagacctaactctagggaa
gcaggaagggatagaagatctgggcgagcatcatcagaaagtagtccaaaaacttcaaga
atggattatcaaagagcagacggagatagttctagaacagagtcaaaaagaccagaaagt
ggaagaagttcaagagcagagtcaaaaagaccagacagtggaagaagttcgagagccgag
ccaaaaagaccagacagtggaagaagctctagaacagagtcaaaaagaccagacagtgga
agaaattcaagaacagggtcacgaagccaatcggttatgggacgttcagctagaggcaag
tcttcagggcagagtggagctcaggggcggggacgttcacgctcgaaatag
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