Corynebacterium suedekumii: QP029_09440
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Entry
QP029_09440 CDS
T09531
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csue
Corynebacterium suedekumii
Pathway
csue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QP029_09440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csue03019
]
QP029_09440
03009 Ribosome biogenesis [BR:
csue03009
]
QP029_09440
Enzymes [BR:
csue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QP029_09440
Messenger RNA biogenesis [BR:
csue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QP029_09440
Ribosome biogenesis [BR:
csue03009
]
Prokaryotic type
rRNA helicases
QP029_09440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
UvrA_inter
adh_short
CMS1
DUF5817_CT
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WIM69472
UniProt:
A0ABY8VK67
LinkDB
All DBs
Position
1876512..1878686
Genome browser
AA seq
724 aa
AA seq
DB search
MSNTDNATGGVNEPDDLSTSENQENPQGDAAQAASTPVEPLTIEDIVDPEAPVQEQNTGD
ADTSETTGSETDVPDTKDNTDNHASEDASTEKADGNGFAALGLPDNVLAAVKKVGYETPS
AIQAQTIPVLMEGNDVVGLAQTGTGKTAAFALPILARIDLEDRSPQALVLAPTRELALQV
ADSFQSFADHLGKISVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLAKGSLDISRL
RFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALFSATMPNGIRKISKQYLNDPQEISV
KSETRTNTNITQRFLNVAHRNKLDAITRILEVTEFEAMIVFVRTKHETEEIAEKLRARGF
SAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAARGLDVERISHVFNFDIPNDTESYV
HRIGRTGRAGRTGEAILFVTPRERRMLRAIERATNAPLTEMELPSVDDVNEARKAKFMDS
ITEALESKQIDLFRGMIKSYAEEHDVPVEDVAAALASQAQAGNDFLMKEPPPERRRERND
RDRGDRGDRGGRFDRDDRGPRGGGSRFDRDGDFATYRLAVGKRQNVRPGAIVGALANEGG
LTSKDFGRITIAVDHTLVELPKDMDKSVLDRLSDTRISGQLINIEPDAGGRPPRRFERDD
RGGRGGFRGGRDRDDRGGRGGFRGRDDRGDRGGYRGRDRDDRGDRGGFRGRDRDDRGGRG
GWRD
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaccgataacgccaccggcggcgtgaatgagccggatgacctaagcacgtcg
gaaaatcaggaaaacccgcaaggtgatgcagcgcaggctgcttccactcctgtggaaccg
ctgaccatcgaggacattgttgatcccgaggcaccggtccaggagcagaacaccggggac
gcggatacttctgagaccaccggctccgagacggatgtcccggacactaaagacaacact
gacaaccacgcctcagaagacgcgtccaccgagaaggcggacggcaacggtttcgccgcc
ctcggcctgccggacaacgtcctcgcagcggtgaagaaggtgggttacgagaccccctcc
gcgatccaggcacagaccatcccggtcctgatggagggtaacgacgtcgtcggcctcgcc
cagaccggtaccggcaagaccgcagccttcgcgctgccgattctcgcccgcatcgacctc
gaggaccgctccccgcaggcgctggttctcgcgccgacccgtgagctcgcgctccaggtc
gccgactccttccaatccttcgcggaccacctgggcaagatcagcgtcctgccgatctac
ggcggacaggcctacggcatccagctgtccggcctgcgccgcggcgcccagatcatcgtg
ggcaccccgggtcgtgtcatcgaccacctggccaagggctccctcgacatctcccgtctg
cgtttcctcgtcctcgacgaggccgacgagatgctcaacatgggcttccaggaggatgtc
gagcgcatcctcgaggacaccccggacgagaagcaggtcgccctgttctcggcgacgatg
cccaacggcatccgcaagatctccaagcagtacctcaacgacccgcaggagatctcggtc
aagtccgagacccgcaccaacaccaacatcacgcagcgcttcctcaacgtcgcgcaccgc
aacaagctcgacgccatcacccgcatcctcgaggtcaccgagttcgaggccatgatcgtc
ttcgtgcgcaccaagcacgagaccgaggagatcgccgagaagctgcgcgcccgcggattc
tccgccgccgccatcaacggcgacatcgcgcagaaccagcgtgaacgcaccgtcgaccag
ctcaaggacggccgactggacatcctggtcgcgaccgacgtcgccgcccgcggcctcgac
gtcgagcgcatcagccacgtgttcaacttcgacatcccgaacgacaccgagtcctacgtc
caccgcatcggccgcaccggccgcgcagggcgtaccggtgaggcgatcctcttcgtcacc
ccgcgtgagcgccgcatgctgcgtgccatcgagcgtgccactaacgccccgctcaccgag
atggaactgccctcggtcgatgacgtcaacgaggcccgcaaggccaagttcatggactcc
atcaccgaggccctcgagtcgaagcagatcgacctgttccgcggcatgatcaagtcctac
gccgaagagcacgacgtccccgtcgaggacgtcgccgcagctctggcctcccaggcccag
gccggcaacgacttcctgatgaaggagcccccgccggagcgtcgccgtgagcgcaacgac
cgtgaccgtggtgaccgaggcgatcgtggtggccgtttcgaccgcgacgaccgtggcccg
cgcggcggcggctcccgcttcgaccgcgacggcgacttcgccacctaccgcctcgcggtg
ggcaagcgacagaacgtccgcccgggcgccatcgtcggcgccctggccaacgaaggcggc
ctgacctccaaggacttcggccgcatcaccatcgccgtcgaccacaccctggtcgagctg
cccaaggacatggacaagtccgtcctggaccgcctgtccgacacccgcatctccggccag
ctcatcaacatcgagcccgacgccggcggacgcccgccgcgccgcttcgagcgcgacgac
cgtggtggccgtggtggtttccgcggcggccgtgaccgcgatgatcgcggcggccgaggc
ggcttccgtggccgtgacgaccgtggtgaccgcggtggttaccgtggtcgggaccgcgat
gaccggggcgaccgtggcggtttccgcggtcgtgaccgtgacgatcgcggcggccgaggc
ggctggcgcgactag
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