Capricornis sumatraensis (Sumatran serow): 138072630
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Entry
138072630 CDS
T10522
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
csum Capricornis sumatraensis (Sumatran serow)
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csum03041
]
138072630 (YTHDC2)
Enzymes [BR:
csum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138072630 (YTHDC2)
Spliceosome [BR:
csum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
138072630 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
Ank_4
AAA_29
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
138072630
NCBI-ProteinID:
XP_068819794
LinkDB
All DBs
Position
2:complement(98250814..98321449)
Genome browser
AA seq
1429 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGPAPCCPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQ
REMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTH
NTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKR
GESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPC
RIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLM
AGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFG
SCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENT
FKPESQRQRAIPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKD
VDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANIHSKASNGW
MALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFDD
EKVDLDLIMHLLYNICHSCEAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFML
HSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVT
MLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTK
LLAPVNCAIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHL
GKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALL
RAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDV
NTNSENWAVVKAALVAGMYPHLVHVDRENVVLAGPKEKKVRFHPTSVLSQPQYKKIPPAN
GQTAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFR
VDGIPNDSSDSEMEDRTTANLATLKLDEWLSFKLEPEAASLLLQLRQKWHSLFLRRMRAP
SKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKS
SADTEFSDESTTAERVLMKSPAPTLHQPQKYKDRGILHPKRSTEDRSDQSSVKSTDSSNY
PSPCASPSPPSSGKGSKSPSPKPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLN
RAFWESSVVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKTATD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggccgagcagcgtctccccgcggccgccggctcccggtgggggcgggggcggc
cccgcgccctgttgccctgggggcggcggccgtgccaaggggctgaaggacattcgtata
gacgaggaggtgaagatcgcagtcaatatcgctctggagcgcttccgctatggggaccag
agagaaatggaatttccttcttctttgaccagtacagaaagagcctttattcatcggttg
agtcagtctcttggtttggtttctaaaagtaaaggaaagggagcaaatagatacctaact
gtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgactcat
aatacaaaacatgctgttaggagcctaattcagagatttcctgtcaccaataaagagcgt
actgaacttctgcctaaaacagaaagaggaaatgtgtttgctgttgaagctgaaaatcga
gaaatgagcaagacaagtgggcgactcaacaacggcatacctcagattccggtaaaaaga
ggagaatctgaatttgattctttcagacaatctctgccagtgtttgaaaaacaagaggaa
attgttaaaataattaaggaaaataaagtagttttgattgtaggagaaactggatctgga
aagactacacagattcctcagttccttttagatgattgctttaaaaatggtattccctgc
cgtatattttgtactcaaccaagacgattagcagctattgctgtggctgaaagagttgct
gcagaaaggagagaaaggattggtcaaacaattggatatcagatccgtttagaaagcagg
gtttctccaaagacacttctgacattttgcacaaatggggtactgcttcgtacactgatg
gcaggagatagtacattgtcaactgtgacacatgttattgtggatgaagttcatgaaagg
gatcgatttagtgattttttacttacgaagttaagagatttactgcagaagcacccaact
ttgaaactaattctttctagtgctgccttagatgtaaatctttttataagatattttggg
agctgtccagtgatatatatacaaggaagaccatttgaagtaaaagaaatgtttttggaa
gacattttaagaactactggatatacaaacaaagaaatgttaaaatacaaaaaggaaaaa
caacgagaggaaaaacagcaaaccacacttacagaatggtactcagctcaagagaatact
ttcaagcctgaatctcagagacagagagctatcccaaatgtgactgaagagtatgattta
ttggatgatggtggtgacgctgtcttcagtcagctgacagaaaaagatgtgaattgcctt
gaaccatggttaataaaggaaatggatgcttgtctttctgacatatggctgcataaagat
gttgatgcctttgctcaggtctttcaccttattttaactgaaaatgttagtgttgattat
agacatagtgaaaccagtgcaacagctctgatggttgctgcaggacgaggtttctcaagt
caagtagaacagttaattagtatgggagccaatattcatagtaaagcatcaaatggctgg
atggctttagattgggctaaacactttggccagactgaaattgtggatcttctagaatct
tacagtgcttctttggaatttggaaatctggatgaaagctctttggttcaaacaaatggg
agtgatctcagtgcagaagacagagaacttctgaaagcttatcaccatagttttgatgat
gaaaaagtagacttggatttgattatgcatcttctatacaatatctgccatagttgtgaa
gctggtgcaatattgatttttctacctggatatgatgaaattgttggtctgagggatcgc
atcctgtttgatgacaagcggtttgctgataatacacatagataccaagtctttatgctt
cattcaaatatgcaaacatctgatcaaaagaaggtattaaaaaacccacctgcaggtgtt
cggaaaataatcctttccaccaatattgctgaaaccagcatcacagtcaatgatgttgtc
tttgttattgattctggtaaggtgaaagagaaatcctttgatgcactgaattttgttaca
atgttaaaaatggtatggatttccaaagctagcgccatacaacgaaaaggcagggcaggg
cgatgcagacctggaatttgtttccgactgttcagtagacttcgattccagaatatgttg
gaatttcagactccagaacttttgagaatgccattacaggaactgtgtttacataccaag
ctgttagccccagttaattgtgctattgctgatttccttatgaaagctcctgaacctcca
ccagctttaattgtaagaaatgctgtacaaatgcttaagacaatagatgcaatggatgca
tgggaagatctcactgaacttggatatcatttggctgacttgccagtagagccacatctt
ggtaaaatggtcctgtgtgctgttgttttgaagtgtctggatcccatccttacaattgcc
tgcacactagcttatcgagatccttttgtcctgccaactcaggcctctcagaaacgtgca
gctatgctttgtaggaaacgtttcaccgcaggaactttcagtgaccacatggctcttctc
agagcattccaggcatggcagaaagctcgaagtgatgggtgggagcgagccttttgtgaa
aagaattttctttcacaagctaccatggaaataatcataggcatgagaactcagttgctt
ggtcaacttagagcatcaggttttgtgagagcaagaggtggtggtgacattcgagatgtt
aacacaaattctgagaattgggctgttgttaaagctgcattggttgcaggcatgtatcct
catttagttcatgtggacagagagaatgtagtattggcagggccaaaggagaaaaaagta
cggtttcatcccacttcagttctcagtcagcctcaatataaaaagattcctccagcaaac
ggtcaaactgcagcaatccaggcactgcccacagattggcttatttatgatgaaatgact
agagctcataggatagctaatattagatgctgttcagcagtgacacctgtcactgtgttg
gtattttgtggaccagctaggttggcaagtaatgctcttcaggaaccttcatcttttcgt
gtggatggtattcctaatgacagtagtgatagtgaaatggaagacaggactactgctaat
ttggcaactttaaaacttgatgagtggctcagtttcaaactagagccagaggcagccagt
ttattgctgcaacttagacagaagtggcacagcttatttttacgtcgaatgagagctcca
tccaaaccttggtctcaagttgatgaagctactataagagcaattatagctgttttaagc
actgaagaacaatctgcaggtttacaacagccatctgggattggccaaaggccaagacct
atgtcttcagaagaacttcctttggcatcatcttggaggtcaaataatagtagaaaaagt
tcagcagatactgaattttctgatgagtctactactgcagaaagagtattgatgaaatct
ccagctccaacactacaccaacctcagaagtataaagatagaggaattttgcatcctaaa
cgaagcactgaggaccggtcagatcaatcttctgtgaaatctacagacagcagcaattac
ccaagcccttgcgctagtccttctcctccatcctcagggaagggctcaaaatctccttca
ccaaaaccaaacatgcctattcgatacttcataatgaagagtagcaatctgagaaacctt
gaaatttctcaacagaagggtatctggtctacaactcctagtaatgagcggaagctaaat
cgagccttttgggaaagcagcgtggtttacttggtattttctgttcaaggatctgggcat
ttccagggattttctagaatgtcttctgagataggaagagagaagagtcaggattggggc
tcagctggactaggaggagtgtttaaggtggagtggatacggaaagaaagtcttcccttt
cagtttgcacaccatttactcaatccttggaatgacaacaagaaagtccagataagcaga
gatgggcaggaactagaacctcaggttggtgaacagttgctccagttatgggaacgcctt
ccattgggagaaaaaaccgcaactgattaa
DBGET
integrated database retrieval system
