Capricornis sumatraensis (Sumatran serow): 138073297
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Entry
138073297 CDS
T10522
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
138073297 (SETX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csum03021
]
138073297 (SETX)
Enzymes [BR:
csum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138073297 (SETX)
5.6.2.5 RNA 5'-3' helicase
138073297 (SETX)
Transcription machinery [BR:
csum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138073297 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
UvrD-helicase
AAA_30
AAA_22
ResIII
nSTAND3
NAT10_TcmA_helicase
SLFN-g3_helicase
AAA_16
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
138073297
NCBI-ProteinID:
XP_068821033
LinkDB
All DBs
Position
1:4561236..4637049
Genome browser
AA seq
2661 aa
AA seq
DB search
MSTCCWCTPGGTSTTDFLQRYASKTRSSEFQTADEDLCYCLECVAEYHKARDELPFLHEV
LWELETLRLINHFERSMKAEIGDDDELYIVDNNGEAQLFDFTGQDFENKLRVPLLEILKY
PYLLLHEHVNELCVEALCRMEQANCSFQVFDKHPGIYLFLVHPNEMVRRWAILTARNLGK
VDRDDYYDLQEVLTCLFKVIELGLLENPDIYTSSVLEKGKLVLLPSHMYDTANYKNYWLG
ICMLLTILEEQAMDSLLLGSDKQNDFMQSILHTMERQSNDDSVDPFWPALHCFMVILDRL
GSKVWGQLIDPIEAFQTIINNVSYNREIQNIRNSSVRTKLEPESYLDDMVTCSQIVYNYN
PEKTKKDSGWRSAICPDYCPNMYEEMETLANVLQSDIGQDMRVHNSTFLWFIPFVQSLMD
LKDLGVAYIVEVIHHLYSEVKDVLNQTDAVCDKVTEFFLLILVSVIELHRNKKCLHLLWV
SSQQWVEAVVKCAKLPTTAFARSSEKSSGNCSKGTAMISSLSLHSVPSNSVQLACVQLIR
SLLKEGCQLGQQTLCKRFRDKLNLFLRGNLSLGWQLTSQETHELQTCLKQIIRNIKFKVP
QFSTSVDLNLACKTPPASFKEESEQIGKKSEKDVHCLENSSSTSSKEPMKADAYQVQESI
LSKANNAIEESKEPCYIKDLKLEGHLSAESCLKLSSKNLACERVQNQVKISTGKYKSVKE
NSSCTPQNGTLRNGPEKVFDRGIIISRRLLTVSSTDSMEKVSASNEDFSLKDDDLGKSSK
AKSKTHKDGVCAKLSHVIKKQHRKSISLEGNLTVPSIEGFYSKKDIGGQKGGGNICTPSL
VPNGILDDKNGEQKSQSCLLLRKKEVKKEKLDIFSTPENSCQIQECHVDTKDLVSLTEMT
NTFMTKASPFKEPVTGHELRDRKISRSTGQFSSNLREQDLSSSPQPDTLTDSQVDRDLHK
LSLMAQASVTKFPSDSTQKSLSQIQRKVKDEKRCFTANQNIRETCRGQVIIISDSDDDEE
EERILGLKKQMKEIKACIEKECPEQHTSIANTNVEQKVLIKEENPVSLLQFEESDSQFFE
FETPCEVFSVWHDQKPDKNSAQENEKNPCSTPVGDTANDLGYETDYVSEEVIKKVAENFE
EHTKPRSSSTSVEEFCEIEVKKPKRRRYEKPIAEDPLRPSSSVKNEDPSGILNKGNLSKN
DFKGVDPRATVPSSSVQRNAAVSPKKSLPKPRTYSRPVRKVPVVKASKKSPSDTKKGQSK
SSHYISCRTTPAIVPPKKFRQCPEPTSTVEKLGLKKAPRRAFELSQRSLECIDQLRDHGR
SVGVVDTRKKTKLIPPQTLSVRNNKKLLTSQDLQLHRQMRSKSQHNRQGRFDCRSTDKTR
AGPCAAQSSAVPVSSKSDYSHHGGAEVTANNKGKQLLTCQSSETEPVKANQCNPVMVNGR
TATTEAIVPTSEALLGRGDPTVHHLEVATLKEGEPEFSSDIEEEDIFLTQRDPEDMDLCS
QIEGEYDKLIEVIDGKDTVQGEEECVRQSESLNSTKCKYKDCVETLKNPGEYCSKHSKTK
ATDEDTFRKPGLPLSASKRSRPSTTKVYSSSSTSRIAGLSKSLESTASLPSCLKNKSSGA
QSVLKGPQPPLLVSLKPVAEVKGLCSVFPAQTPNNSNRQVLRVPFGESKSFLTSSPVNIL
TSSQSISDTFVKEVLKWRYEMFVNFDQCGPPSSLCQSIARRVPIRFQDCGDYFNVFFPLM
VLNTFETVAQEWISSPNKEKFHQLHLRKFPGDYKKYWEFVVYLEESELAKQLHPRENDLV
FLVPERLNEEKKDLEWSHLEDACEYYCGYVHKFRRTSVMHNGKSECSVSIQTQDNLPVNL
NELVKCFVISSLVTTQRKLKAMSLLSGRNQLARAILNPNPMDFCTKDLLTTTSERIVAYL
KDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGILYRLLTENQRRGHSD
ENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPMGNCGDINLVRLGPEKS
INNEVLRFSLDSQVNHRMKKDLPSHVQEMHKRKEFLDRQLDELSRQRALCRGGRESQRQE
LDGKIARVSKERQELASKIKEVQGRPQKTQSIIILESHIICCTLSTSGGLLLEAAFRGQG
GVPFSCVIVDEAGQSCEVETLTPLIHRCNKLVLVGDPKQLPPTVISVKAQDYGYDQSMMA
RFHKLLEESVEHNMIGRLPVLQLTIQYRMHPDICLFPSSYVYDGTLKTNRGTETNRCSSD
WPFQPYLVFDVGDGLERRDNDSYVNVQEIKLVMELIKLIKDKRRDINFRNIGIITHYKAQ
KTMIQKDLDKEFDRKGAAEVDTVDAFQGRQKDCVIVTCVRANATQGSIGFLASLQRLNVT
ITRAKYSLFILGHLRTLVENRHWYHLIQDAQKRGAIIKTCDKNYRHDAMKILKLKPLLQR
SLTHPPAVTPEASRPQGGLPSSKQDGELSKTSFASSLYHSPSDSKEATVTEAAKDPERPP
TQDWLRDPRLLRRMGLAFDAQGISLREPQPLSPQHSGAAPPSGAPGCPGSPQEPCTVRQQ
GVTLNSHMPHTQCDSPAAGTDTSTSKKRCDQEEGVLGHRRETRALSEGDQEWWASSHTKR
NSDWDERGLEEDSHSKKRRVL
NT seq
7986 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatgttgttggtgtaccccagggggtacttccaccactgacttcctgcaacgc
tatgcatccaagacccgctccagtgaatttcagacagctgatgaagacctctgctactgc
ttggagtgtgtggctgaataccacaaagcaagggacgaattgccgttcttacatgaggtt
ttatgggaattagaaaccttacgtctcataaatcactttgaaagatccatgaaggcagaa
attggagatgatgatgagttatatatagtagacaacaacggagaggcacagctgttcgac
ttcactggccaagactttgaaaataagcttcgagttcctcttcttgaaatactgaaatat
ccatatctgcttttacatgagcatgtcaatgaattatgtgttgaagcactttgccggatg
gaacaagctaattgctcctttcaagtttttgacaaacatccagggatctatttatttttg
gttcatcccaatgaaatggttcggcgttgggctatcctgactgcaagaaacttggggaaa
gtggatagagatgattactatgacttacaggaggttttgacttgcctttttaaagttatt
gagttgggacttttagaaaacccagacatttatacttcttctgttcttgagaagggtaaa
ctggttcttctgccttcacacatgtatgatactgccaactacaaaaactattggttaggt
atttgcatgctgcttaccattcttgaggagcaagccatggattcactgttgttgggctca
gataaacagaatgattttatgcagtcaatacttcataccatggagaggcagtcaaatgat
gatagtgtggatcctttctggccagcgttacactgtttcatggtgattctggatcgcctt
ggatctaaggtctggggtcaacttattgatcctattgaagcatttcaaaccattattaac
aatgtgagctacaatagagagatccagaacatacggaacagctctgtgaggaccaagtta
gaaccggagtcatatttggatgatatggtgacttgcagccagattgtatacaattataat
cctgaaaagaccaaaaaggattcggggtggagatcagccatttgccccgattattgtcct
aacatgtatgaagaaatggaaacattagctaacgtgctccagtcagatattggtcaggac
atgcgtgttcataacagcacatttctgtggttcatcccttttgtgcaatccctcatggac
ctgaaggatttgggtgtggcttacatagtagaggttattcaccatctgtactctgaagtc
aaagatgttctcaaccagacagacgctgtgtgtgacaaagtcactgagtttttccttctg
attttggtgtccgtgattgaactgcatagaaataaaaaatgtctacatttgctgtgggtt
agttcccagcagtgggtggaggctgtggtgaagtgtgccaagctaccgaccacagcgttt
gcacggagttccgagaagtcatctggaaactgttccaaaggcacagcaatgatatcatcc
ctgtcactgcattcagtgccctccaactctgtgcagctggcttgtgtgcagctgattaga
agtctcctgaaagaaggctgtcagcttgggcagcagactctctgtaaacggttccgagat
aaactcaacttattcctgcgagggaatttatctttaggttggcagttgactagtcaggaa
acccatgagctacagacttgtttaaagcaaattattaggaacataaaattcaaagtacct
cagtttagcacttctgtggatctgaatcttgcatgtaagacgcctcctgcatcttttaaa
gaagaaagtgaacaaatagggaagaagtctgaaaaagatgtgcactgtctggaaaactcc
agctcaacatcttctaaagaaccaatgaaagctgatgcatatcaagtacaagagagtatt
ttgagcaaagcaaataatgccatagaagagagtaaagagccatgttatataaaagatttg
aaactagaaggccacctctcagctgagtcatgtttgaagctgagtagtaaaaaccttgcc
tgtgaaagagttcaaaatcaagttaaaataagtacagggaaatataagtctgtaaaagag
aattcctcatgtaccccacagaatggtactttaagaaatggtccagaaaaagtatttgac
agaggaataataatatcaaggcgcttactgactgtttctagcacggattctatggaaaaa
gtgtctgcctccaatgaggacttctctttaaaggatgatgatcttggcaaaagctcaaaa
gcaaaatctaagacacataaagatggagtctgtgctaagttgtcacatgtaataaaaaag
caacacaggaaaagtatcagtttagagggaaacctgactgtacctagcattgagggtttc
tattcaaagaaagatataggaggtcagaaaggaggtggaaacatatgcactccttcttta
gtccctaatggtattctggatgataaaaatggagaacaaaaatcacaaagctgtttattg
ctgagaaagaaggaagtaaagaaagaaaagttagatattttttctacccctgaaaacagt
tgtcaaatacaggaatgtcatgttgataccaaagatttggtctcactcacagaaatgacc
aatactttcatgacaaaagcatctccctttaaagagcctgtgactggacatgaattgaga
gataggaaaattagtaggagcactggtcagttttcttctaatttaagagaacaggacctt
agcagcagtccccagcctgacaccttaacagattctcaggtagatagagacctccacaaa
ttatctttaatggctcaagccagtgttactaagttcccatcagattcaactcaaaaaagt
ttatcccaaatacaaagaaaagtaaaagatgagaaaagatgtttcacagcaaaccaaaat
atcagggaaacctgccgtggacaagttattattatttcagattccgatgatgatgaggag
gaggaaagaatcctgggtttgaagaaacaaatgaaagagatcaaagcatgcattgagaaa
gaatgtccagagcaacatacttcaatagctaacacaaatgtggaacagaaggtattaata
aaggaagaaaatccagtgtcccttttgcagtttgaggaatctgattctcagttttttgag
tttgagactccatgtgaagtgttttcagtttggcatgatcagaaaccagacaagaattca
gctcaagagaatgagaaaaatccatgctcgactcctgtgggtgatactgcaaatgatttg
ggttatgagacagattatgtatctgaagaggtcattaaaaaagtagcagagaactttgaa
gagcacacaaaaccacgtagtagtagtacttctgttgaggaattttgtgaaattgaagta
aaaaaacccaagagaagacggtatgaaaaacctatagctgaagatcctctaaggccttca
tcttctgtcaaaaatgaggacccgtctggtattcttaacaaggggaatctgagtaaaaat
gattttaaaggtgtagacccaagagctacagttcccagttcaagtgttcagagaaacgct
gcggtttccccaaagaagtctcttccaaagcctcgcacgtattccagacctgtcaggaaa
gttccagtggttaaagcttctaagaaatccccttcagataccaagaaaggacagagtaaa
agctcccattacataagctgtagaacaactcctgctattgtgccgccaaagaaatttcgc
cagtgtcccgaaccaacttcaacggttgagaaacttggcctgaaaaaggctcctcgtagg
gcgtttgaattgtcccagcgatctttagagtgtatagatcagctacgtgaccatggcaga
tctgttggagtagtggatacccggaaaaagacaaagttaattcctcctcagactctctct
gtcagaaataataagaaactgctgacgagtcaagaccttcagttgcataggcagatgaga
tccaaatcacaacacaacagacaaggacgttttgattgtcgaagtacagataagacacga
gcagggccatgtgctgcacagagctctgctgtgccagtgtcaagtaagtcagattacagt
catcacggaggagccgaggtgactgctaacaataagggaaaacagttactaacatgtcag
tcttctgaaacagaacccgtgaaagcaaaccagtgtaatcctgtcatggtaaatggaaga
acagcaacaactgaagccattgttcctacctcagaggccctgttaggcagaggtgaccca
acagtccatcatttagaggtggcgactttgaaagagggagagcctgaattcagcagtgac
atagaggaggaggatatattcttaacacagcgtgaccctgaagacatggatttatgttca
caaattgagggagagtatgataaactcattgaagtcattgatggaaaagataccgtgcag
ggagaggaagagtgtgtgaggcagtccgaatctttgaatagcacaaaatgtaagtacaaa
gattgtgttgaaactctgaaaaacccaggtgaatactgctcaaaacactcaaaaactaaa
gccacagatgaagatacatttcgtaaacctggcttgcctctgtctgcatcaaaacgttca
agaccttccacgaccaaggtttatagttcaagcagtacttcacggattgctggtctctcc
aagtctttggaaagtaccgcatccctcccatcatgtctgaaaaataagtcaagtggggca
cagtctgttctgaaaggaccacagccaccccttctggtgtctctgaagccagtggctgaa
gtgaaaggtctgtgcagtgttttccctgctcagactccaaataactccaacaggcaagtt
ttgagagttccatttggggaaagcaaatcttttttgacttcctctccagtaaacattctc
acgtcgtcacagtccatctctgatacctttgtaaaagaggtcttgaaatggagatacgag
atgtttgtgaactttgatcagtgtgggcccccgtcgagtctgtgtcagtccatcgcaaga
cgggtgcctatcaggtttcaagactgtggagattatttcaatgtgtttttccctttgatg
gtactgaatacttttgaaacagtggcacaggaatggatcagctctccaaacaaagagaaa
ttccatcagttgcatttacgaaaatttcctggtgattataaaaaatactgggagttcgtg
gtttatcttgaggaaagtgaactagctaaacagcttcatccaagggaaaatgatctggtg
tttttggttcctgaaagactcaatgaggagaagaaagatttagagtggagtcacctggag
gatgcctgtgaatattactgtggctatgttcataaattccgccgtacttcagtcatgcat
aatgggaaatctgagtgttcggtttccatccagactcaagataatttaccagtcaattta
aatgaactcgtgaaatgctttgtaatcagctctctggtgactacacaaaggaagttgaaa
gccatgtctttgctgagtggtcggaaccaactggccagagccattctgaatccaaacccc
atggacttctgtacaaaagatttactaactacaacatctgagagaattgttgcctactta
aaagatttcaatgaagaccagaagaaagcgatagaaactgcatatgccatggtgaaacac
tccccatcagttgccaagatctgtctgattcatggaccacctggaacaggaaaatcaaaa
accattgttggcatcctgtaccgcctgctgactgagaaccaaaggagggggcattcagat
gaaaactccaatgccaaaatcaagcaaaaccgtgtcctcgtctgtgcaccttccaatgca
gctgttgatgaacttatgaaaaaaattatccttgaattcaaagaaaagtgtaaagacaag
aagaatcctatgggaaactgtggagatataaacttagtacgtctaggtccagaaaagtct
attaataatgaggtcctaagattcagtttggatagtcaagttaaccacagaatgaaaaaa
gacttaccatctcatgttcaggagatgcacaaaagaaaggaatttctcgatcgtcaactt
gatgaactttcccgccagcgtgctttatgccgaggtggaagggaatcacagaggcaagaa
ttagatggaaaaattgccagagtttcaaaagaaaggcaggagcttgcttctaaaattaaa
gaggttcaaggacgcccacagaagacacagagcatcatcatcttagagtcgcacatcatt
tgctgcacgctgagcacgagtggtggcctgctgctcgaggctgctttccgtgggcaggga
ggcgtccccttcagctgtgtcatcgttgatgaggctggacagtcctgtgaagttgaaact
cttactccgctcatccatcgttgcaacaagcttgtcctcgtaggagaccctaagcagctc
cctcccacagtcatttccgtgaaggcacaggactatggctatgaccagtcaatgatggcc
cgcttccacaagctcctggaggagagtgtggagcacaacatgattggcaggctgcctgtc
ttacagctcaccatccagtaccggatgcacccggacatatgcctctttccttctagttat
gtttatgacggaaccttgaaaacaaatagagggacagagaccaatcggtgctcatctgac
tggccatttcaaccctacctcgtgtttgatgttggagatggcttagaaagacgggataat
gactcatatgtaaatgttcaagagataaaactggtaatggaactaattaaacttattaaa
gacaaaagaagggacattaatttccgaaacattggcataataacccattacaaggctcag
aagacgatgattcagaaggatttggacaaagagtttgatagaaaaggggcagcagaagta
gataccgtggatgccttccagggtcgtcagaaagactgtgttattgttacatgcgtcaga
gcaaatgccacacaaggctcaattggatttctggcaagtttgcagagattgaatgtcacc
atcacacgagccaagtacagcctcttcatcctgggacacttgagaaccctagtggaaaat
aggcattggtatcacctgattcaagatgcacagaaacgtggcgccattattaagacttgc
gacaagaactacagacatgatgcaatgaagatcctgaagctcaaaccattgcttcagagg
agccttactcaccctcctgctgtcactccagaggcatccagaccccagggtggcctaccc
agcagcaagcaagatggtgaactcagcaagacatcttttgcttcttccctgtaccactca
ccctctgattccaaagaagccacagtcactgaggctgcaaaggatcctgaaaggccaccc
actcaggactggcttcgggacccacgactgctgcggaggatgggcttagcctttgatgcc
caaggaataagcctcagggagccgcagcccttgagcccccagcattccggagcagcgcct
ccatcaggcgcgccaggctgccctgggagtccccaggagccatgcaccgtcaggcagcag
ggagtcaccctgaacagccacatgcctcacacgcagtgtgactctccagccgctggtact
gacacttccacaagcaaaaagaggtgtgaccaggaagagggggtgcttggccacaggaga
gagaccagggccttgagtgaaggggatcaggagtggtgggcgagctcccacacaaagagg
aactcagactgggatgagaggggcctggaggaggacagccactcaaagaagagacgggtt
ttatag
DBGET
integrated database retrieval system
