Capricornis sumatraensis (Sumatran serow): 138078508
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Entry
138078508 CDS
T10522
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138078508 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csum03041
]
138078508 (PRPF40B)
Spliceosome [BR:
csum03041
]
Complex A
U1 snRNP components
U1 related factors
138078508 (PRPF40B)
Complex B
138078508 (PRPF40B)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
138078508
NCBI-ProteinID:
XP_068827446
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Position
4:complement(74932311..74945414)
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AA seq
865 aa
AA seq
DB search
MPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGIMPPMLPPMGAPPPLTQIPGMVPPMMPGM
LMPAVPVTAATAPGADTASSAVAGTGPPRALWSEHVAPDGRVYYYNADDKQSVWEKPSVL
KSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEALVKQEAAGKQQQPQ
TLQPQPPQPQPDPPPAPPGPTLLPTGLLEPEPGGSEDCTVSEAAQPPEQGFLQQPEEGPG
SSAGQHQPPQQEEEESKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVV
TDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRY
RRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSS
VNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRE
RRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDIRFANMLGQPGSTPLDLFKF
YVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNS
LLEKAEAREREREKEEARRLRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQI
TLESERIRLFREFLQVLETECQHLHSKGRKHGRKGKKHHRKRSHSPSGSESGDEELPPPS
LRPPKRRRRNPSESGSEPSSSLDSVESGGAALGGRGSPSSRLLLGSDHGLRKAKKPKKKT
KKRRHKSNSPESETDPEEKAAKESDEKEPEQDKDRDLRRAELPNRSPAFGIKKEKTGWDT
SESELSEGELERRRRTLLQQLDDHQ
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctccaggaatccccccaccttttcctccaatggggctccctcccatgagtcag
agaccaccagccatcccccccatgccacctggcatcatgcccccaatgctcccaccaatg
ggggcaccaccaccactcacacagataccaggaatggtacctcccatgatgccaggaatg
ctgatgccagcagtgcctgtcaccgcagcgacggctccgggtgcggacaccgccagctct
gctgtggctgggacaggccctccgagggccctatggagtgagcatgtggcccctgatggg
cgcgtctactactacaatgctgacgacaagcagtccgtgtgggagaagcccagcgtgctc
aagtccaaggcagagctcctgctgtcccaatgtccctggaaagagtacaagtcggacaca
ggcaaaccttactactacaacaatcagagtaaggagtcccgctggacccggcccaaggac
ctggatgacctggaggctctagtcaaacaagaggctgcagggaaacagcagcagccgcag
acactacagccacagcctcctcagcctcagcccgatcccccacctgcgccgcccggcccc
accttgctgcccacaggcctcctagaacctgagccgggcgggagtgaagattgcaccgtg
tcagaggctgcccagcccccagaacaggggttcctgcagcagccagaggagggccccggc
agttctgctggacagcatcagccaccacagcaagaggaagaagaatcaaaaccagagccg
gagagatctggcctcagttggagcaaccgggagaaggcaaagcaggccttcaaggagctg
ctgagggacaaggctgtcccctccaatgcttcgtgggaacaggccatgaagatggtggtc
actgacccccgttacagtgccttgcccaaactgagtgagaaaaagcaggcattcaatgcc
tacaaagcacagcgggagaaggaggaaaaggaagaggcccggctaagagccaaggaggcc
aagcagaccttgcagcatttcctggagcagcatgaacgcatgacctccaccactcgctac
cggcgggcagaacagacctttggggagctggaggtctgggctgtggtccctgagagggat
cgaaaagaggtttatgatgatgtcctcttcttcctggccaagaaggagaaggaacaagcc
aagcagctgcggcgccgcaacatccaggccctgaagagcatcctagatgggatgagtagt
gtcaacttccaaaccacatggtcccaggcccagcagtacctcatggataaccccagcttt
gctcaggaccatcagctacagaacatggacaaggaagatgcactgatctgctttgaggag
cacatccgagctttggagagggaggaggaggaggagcgagagcgagcccgacttcgggag
cggcgccagcagcgcaagaaccgggaagccttccagaccttcctggatgagctgcacgag
acagggcagctgcactccatgtccacctggatggagctgtacccagcggtcagcactgat
atccgctttgccaacatgctgggccagccgggctccacccctctggacttgttcaagttc
tatgtggaggagttgaaggcgcggttccatgatgagaagaagatcataaaggacatcctt
aaggaccggggcttctgcgtggaggtgaacacagccttcgaggacttcgcccacgtcata
agctttgacaagagggctgctgcgctggatgcaggcaacatcaagctgactttcaatagt
ctgctggagaaagcagaggcgcgtgagagagagcgggagaaggaggaggcccggcggctg
cggcgcagggaagctgccttccgaagcatgctgaggcaggctgtgcctgctctggagctg
ggcacggcctgggaagaggtccgtgagcgctttgtgtgcgactcagcctttgagcagatc
accctggagtcggagcggatccggctctttcgggagttcctgcaggtactggagacggaa
tgccagcacctccacagcaaaggccggaaacacggcagaaagggcaagaagcaccatcgc
aagcgttcccactcgccttcaggctctgagtcaggagacgaggagctgcccccgccctct
ctccggccccccaagcggaggcgacggaacccctcggagtcgggctctgagccctcttcc
tcacttgattctgttgaaagtgggggtgctgcccttggaggacggggttccccctcctct
cgccttctcctcggatcagatcatggtcttcggaaagccaagaaaccaaaaaagaaaact
aagaagagaagacacaagtcgaacagtcccgagagcgagacagaccctgaggagaaagct
gccaaggagagtgatgagaaagaaccagaacaggacaaggacagggacctccggcgggca
gagctccctaatcgctccccagcctttggaatcaaaaaggagaagacgggctgggacacg
tcggaaagcgagctgagcgagggtgagctggaaagacggcggcggacgctcttgcagcag
ctggacgaccaccagtga
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