Capricornis sumatraensis (Sumatran serow): 138080798
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Entry
138080798 CDS
T10522
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum04512
ECM-receptor interaction
csum04514
Cell adhesion molecule (CAM) interaction
csum04820
Cytoskeleton in muscle cells
csum05144
Malaria
csum05205
Proteoglycans in cancer
csum05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138080798 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
138080798 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
138080798 (SDC1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
138080798 (SDC1)
09174 Infectious disease: parasitic
05144 Malaria
138080798 (SDC1)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
138080798 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csum04131
]
138080798 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
csum04090
]
138080798 (SDC1)
00535 Proteoglycans [BR:
csum00535
]
138080798 (SDC1)
Membrane trafficking [BR:
csum04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
138080798 (SDC1)
CD molecules [BR:
csum04090
]
Proteins
138080798 (SDC1)
Proteoglycans [BR:
csum00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
138080798 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Romo1
Motif
Other DBs
NCBI-GeneID:
138080798
NCBI-ProteinID:
XP_068829749
LinkDB
All DBs
Position
1:complement(27984396..28008043)
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AA seq
317 aa
AA seq
DB search
MRRAALWLWLCAMALRLQPALPHSVPINMPPEDQDGSGDDNDNFSGSGAGALPDISSSQT
PSTWKDLGPVMTTATAPEPTSPDAIATSTTILPTGEQPEGGGAVLLAEVEPGLTAQEKEA
THPPSETTLHLTTHSVSTARATMTPGPATSHPHRDVQPDHRETSAPTGRGRLEPHMPHME
DGGPPATEKAAEEDPSTQIPVGEGSGEQDFTFDLSGENAAGANAAGAAVEPGSRNVAPGD
PEATGATGASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQ
ANGGAYQKPTKQEEFYA
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcgcggcgctctggctgtggctctgcgctatggcgctgcgcctgcagccggcc
ctcccgcacagtgtgcccataaacatgccccccgaagatcaggacggctctggggacgac
aatgacaacttctctggctcgggtgcaggtgctttgccggatatcagttcatcacagacg
ccctccacctggaaggacctggggcctgtgatgaccacagccacggctccagagcccacc
agcccagatgccattgccacctccaccaccatcctgccaaccggagagcagcctgagggg
ggtggggcggtgctcctggcagaggtggagcctggccttaccgcccaggagaaggaggcc
acccacccacccagtgagaccacgctgcacctgaccactcacagcgtgtccacagccaga
gccactatgaccccgggacccgccacctcccatccccacagggacgtgcagcccgaccac
cgtgagacctcggctcccacaggccggggccgtctggagccgcacatgccccacatggag
gatggaggtcctcctgccactgagaaggcggctgaggaggacccctccacccagatccca
gtgggagagggctctggggaacaggacttcaccttcgacttgtctggggagaatgcagcc
ggggccaacgcagccggggctgcagtggaacctggctcacggaacgtagctccaggggat
cctgaggccacaggggctaccggggcctcgcagggccttctggaccggaaggaagtgctg
ggaggggtcattgctggaggcctcgtggggctcatctttgccgtgtgcctggtgggtttc
atgctgtaccggatgaagaagaaggacgaaggcagctactccttggaggagccaaaacaa
gccaacggcggggcctaccagaagcccactaagcaggaggagttctacgcctga
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