Capricornis sumatraensis (Sumatran serow): 138081078
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Entry
138081078 CDS
T10522
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum00100
Steroid biosynthesis
csum01100
Metabolic pathways
Module
csum_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
138081078 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
csum01006
]
138081078 (FDFT1)
Enzymes [BR:
csum01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
138081078 (FDFT1)
Prenyltransferases [BR:
csum01006
]
Terpene biosynthesis
Squalene/phytoene synthase
138081078 (FDFT1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
Motif
Other DBs
NCBI-GeneID:
138081078
NCBI-ProteinID:
XP_068830236
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Position
6:complement(15711990..15738742)
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AA seq
471 aa
AA seq
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MAAVACSTKAMSLFKRTLVLSPGAAPRGAGTPSRGCPLPPAAWPSKDRLRGEGVCGRLRS
SAVAGRSPQPHSSTSASPTAVCLLSPQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMR
HAVCIFYLVLRALDTLEDDMTISIERKVPLLHNFHSYLYEPDWRFTESKEKDRQVLEDFP
TISLEFRNLAEKYQTVIVDVCQKMGFGMAEFLDKRVTSEREWDKYCHYVAGLVGIGLSRL
FSASELEDPLIGEDTERANSMGLFLQKTNIIRDYLEDQREGREFWPQETWSKYVKKLGDF
AKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATLAACYNN
QQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTRQIISTI
RTQNLPNCQLVSRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYIQTGEH
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagtcgcctgcagcaccaaggccatgtctctcttcaagaggactttggtgctg
agtcccggcgcggcacccaggggcgcgggcaccccttcgcgcggctgccccttgcctccc
gccgcctggccgtccaaggaccggctgcggggagagggcgtgtgcggccggctgcggagc
tccgcggtagccggccgctcaccccagccccactccagcacctccgcgtctcccaccgcc
gtgtgtctcctctccccgcaggactcgctcagcagcagcttgaaaacttgctacaagtac
ctgaatcagaccagtcgcagtttcgcagctgttatccaggcgctggatggagaaatgcgc
cacgcagtatgcatattttatctggttctccgagctttggacacgctggaagatgacatg
actatcagcatagagagaaaagtgccactgctacacaactttcactcatacctctatgag
cctgactggcggttcacggagagcaaggaaaaggaccgacaagtcctggaggactttcca
acgatctccctggagtttcgaaatctggctgagaaatatcaaacagtgattgtcgacgtt
tgccagaagatgggctttgggatggcagagtttctggataagcgcgtgacgtctgaacgg
gagtgggacaagtactgtcactatgttgctgggctagtgggaattggcctctcccgtctc
ttctcggcctcagagttagaagaccccttaattggtgaagacacagagcgagccaactct
atgggccttttcctgcagaaaacaaacatcatccgtgattatctggaagaccagcgagaa
ggaagagagttttggcctcaagagacttggagcaagtatgtgaagaagctgggtgacttt
gctaagccagagaacatcgacttggctgtgcagtgtctgaatgaactcatcaccaacgca
ctgcaccacatccccgacgtcatcacctacctgtcacgacttagaaaccagagtatattt
aacttctgtgctattccacaggtcatggccattgctactttggctgcctgttacaataat
cagcaggtgttcaagggggtggtgaagattcggaaagggcaagcggtcaccctgatgatg
gatgccaccaacatgccagctgtaaaagccataatacaccagtacatggaagagatttat
cacagaattcccaactctgacccctgttccactaaaacacggcagatcatctccaccatc
aggacacagaatctccccaactgtcagctggtctcacggagccactactcgcccatctac
ctgtcattcgtcatgctcctggcggccctgagctggcagtacctgagcaccctgtcccag
gtcacagaggactacattcagacgggggagcactga
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