KEGG   Capricornis sumatraensis (Sumatran serow): 138084608
Entry
138084608         CDS       T10522                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
csum  Capricornis sumatraensis (Sumatran serow)
Pathway
csum03420  Nucleotide excision repair
csum04120  Ubiquitin mediated proteolysis
csum05161  Hepatitis B
csum05170  Human immunodeficiency virus 1 infection
csum05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:csum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    138084608 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    138084608 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    138084608 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    138084608 (DDB1)
   05161 Hepatitis B
    138084608 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:csum04121]
    138084608 (DDB1)
   03400 DNA repair and recombination proteins [BR:csum03400]
    138084608 (DDB1)
Ubiquitin system [BR:csum04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     138084608 (DDB1)
DNA repair and recombination proteins [BR:csum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      138084608 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      138084608 (DDB1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd Beta_propel
Other DBs
NCBI-GeneID: 138084608
NCBI-ProteinID: XP_068835054
LinkDB
Position
8:11124164..11150481
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARIAKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacggcacagaagcccaccgccgtgaacggctgcgtgacc
ggacactttacttcagcggaagacttgaacctgttgattgccaaaaatacgagattagag
atctatgtggtcactgctgaggggcttcggcccgttaaagaggtgggcatgtatgggaag
attgctgtcatggagcttttcaggcccaagggggagagcaaggacctgctgtttatcctg
acagctaagtacaatgcctgcatcttggagtataagcagagtggcgagagcattgacatc
ataactcgagctcatggcaatgtgcaggaccgaattggccgcccctcagagacgggcatt
attggcatcattgaccccgagtgccgaatgattggcctgcgactctatgatggtctgttc
aaggttattccactagaccgggacaataaagagctcaaggcctttaacatccgcctggag
gagttgcatgttatcgacgtcaagttcttatatggttgccaagcacctaccatctgcttt
gtctaccaggaccctcaggggcggcatgtaaaaacctatgaggtgtctctccgagagaag
gagttcaataagggcccttggaaacaggaaaacgtagaagctgaagcttccatggtgatt
gcagtccctgagccctttggaggcgccatcatcattggacaggagtccatcacgtatcac
aatggtgacaaatacctggcgattgcccctcccatcattaagcaaagcacaattgtgtgt
cacaatcgagtggaccccaatggctctcgctatctgctgggagacatggaaggacggctc
ttcatgctgcttttggaaaaggaggaacagatggatggcactgtcaccctcaaggatctc
cgtgtggaactccttggggagacctctattgccgagtgcttgacgtaccttgacaatggt
gttgtgtttgtcggttctcgccttggtgattcccagcttgtgaagctcaatgttgacagc
aatgaacaaggctcctacgtagtggccatggaaacctttaccaatttaggacccattgtg
gacatgtgtgttgtggacctggagaggcaggggcagggacagctggtcacttgctctggg
gcattcaaggaaggttccttgcgaatcatccggaacggaattggaatccacgagcatgcc
agcattgacttgccaggcatcaaaggcctgtggccactgaggtctgatcccaaccgggag
accgatgacactttggtgctctcttttgtgggccagacaagagttctcatgttaaatgga
gaggaagtggaagaaaccgaactgatgggttttgtggacgatcagcagactttcttctgt
ggcaacgtggctcatcaacaacttatccagatcacttcagcatctgtgaggctggtctct
caagagcccaaagcacttgtcagtgagtggaaggagcctcagggcaagaatatcagcgtg
gcctcctgcaacagcagccaggtagtagtcgccgtggggagggccctctactacctgcag
atccatcctcaggagctccggcagatcagccacacagagatggaacacgaagtggcctgc
ttggacattacccctctaggagacagcaatggaatgtcccctctttgtgccatcggcctc
tggacagacatctcagcccgaattgcgaagctgccctctttcgagctactgcacaaagag
atgctgggtggagagatcattccccgttccatcctgatgaccacctttgagagcagccac
tacctcctctgtgccttgggagacggagcactcttctactttgggctcaacatcgagaca
ggcctgttgagcgaccgtaagaaggtgactctgggcacccagcccacggtattgagaact
ttccgttctctttcaaccaccaacgtctttgcttgctccgaccgccctactgtcatctac
agcagcaaccacaaattggtcttctccaatgtcaacctcaaggaagtgaactacatgtgt
cccctcaattcagatggctatcctgacagcctggcactggccaacaacagcaccctcacg
attggcaccatcgatgagatccagaagttgcacattcggacggttcccctgtatgaatct
cccaggaagatctgctaccaagaggtgtcccagtgctttggggtcctttccagccgcatc
gaagtccaggacacgagtgggggtacaactgctctgaggcccagcgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctgttctccagcagcacagcccctcacgagacc
tcctttggagaagaggtggaggtgcataacctccttatcattgaccagcacacctttgaa
gtgcttcatgcccaccagtttctgcagaatgagtatgccctcagcctggtctcctgcaag
ttgggcaaagaccccaacacgtacttcattgtgggcacggccatggtgtacccagaagag
gcagagcccaagcagggtcgtattgtggtctttcagtattcagatggaaaactacagact
gtggctgaaaaggaggtgaagggggccgtgtactccatggtagagtttaacgggaagctg
ttagccagcatcaacagcacggtgcggctttatgagtggacgacggagaaggagctgcgc
accgagtgcaaccactacaacaacatcatggcgctctacctgaagaccaagggcgacttc
atcctggtgggcgacctgatgcgctcggtgctgctgctggcctacaagcccatggagggc
aacttcgaagagattgctcgagactttaaccccaactggatgagtgctgtggaaatcttg
gatgatgacaatttcctgggggctgaaaatgcctttaacttgtttgtgtgtcagaaggat
agcgctgccaccacggacgaggagcggcaacacctccaggaggttgggctcttccacttg
ggcgagttcgtcaacgtcttttgccatggctctctggttatgcagaacctgggcgagact
tccacgcccacgcagggctcggtgctcttcggcacagtcaatggcatgattggcctggtg
acttcattgtcagagagctggtacaacctcttgttggacatgcagaatcgactcaataaa
gtcatcaaaagtgtgggcaagattgagcactccttttggagatcctttcatactgaacga
aagacagaaccagccactggcttcatcgatggtgacttgattgagagtttcctggatatc
agccggcccaagatgcaggaagttgtggcaaacctacagtatgacgatggcagcgggatg
aagcgagaggccactgcggatgacctgatcaaggtggtggaggagttaactcggatccat
tag

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