Capricornis sumatraensis (Sumatran serow): 138084769
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Entry
138084769 CDS
T10522
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
csum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138084769 (PCF11)
Messenger RNA biogenesis [BR:
csum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
138084769 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138084769
NCBI-ProteinID:
XP_068835252
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Position
8:37897863..37921929
Genome browser
AA seq
1685 aa
AA seq
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MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQPEKSRPGPSLQIPDTKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLTQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQDSESTRVSDMSKRDPRLKKHLQDKTDSKDDDT
KDKRKTVEKKEKDEHVKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPSRE
ERSAKRSTKQDVRDPRRIKKTEEERPQETAGQHSTKSGTEPKENVENWPSSKSTKRWKSG
WEENKSLQQGDEHSKAPHLRHRESWSSTKGILSPRAPKPQHRLSVDANLQIPKELTVASK
RELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCSVRDSPTEENKGGLKKKPL
LSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRN
SGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSSKGVREEQRSPFNDR
FPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLYDGPSRPSVARDGPAKMIF
EGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT
PLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLR
FEGPHGQPVGGLRFENPRGQPVGGLRFEGGHGPSGAAMRFDGPHGQPSGGIRFEGPLLQQ
GVGMRFEGPHGQSVAGMRFEGQHNQLGGNLRFEGPHGQPGVGIRFDGPLVQQGGGMRFEG
PSVPGGGLRIEGPLGQGGPRFEGCHALRFEGQPGQSSLLPRFDGLHGQPGPRFERTGQPG
PQRFDGPPGQQVQPRFDGVPQRFEGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQ
TGPYNDPPGNAFNAPSQGLQFQRHEQMFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFD
EKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVSQPVAFGQGQQFLPVHPQNPGAFVQN
PSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPAEEEEDQN
EDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNR
TEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQ
SVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDC
TPSPSKTPVENPLNIMLNIVKNELQEPSESPKVKEERIDTPPACTEESIATATEIKTEND
TVESV
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccctcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatatttcctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaagtttttaaataaatcgcctgaagaatcttcaacacctggcacagtggtc
agttcccctagcatctccactcctcctattgttccggatatacaaaagaatcttactcaa
gagcagctaataaggcagcaattactggcaaaacaaaagcagctgttagaacttcagcag
aaaaagctggagcttgaacttgagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgtttcacag
attcccccaatggcagttaaagctcctcatcaggttcctgtgcagcctgagaaaagtcgt
ccaggtccgtccttacaaattccagatacaaaaggaactaaccgggatccccgtcttaat
aggatgagtcaacactcttctcatggaaaagatcaaagtcacaggaaagaattcctaatg
aacacactgacccaatctgatattaagacaagtaaaactgtaccctctgaaaaactgaat
tcatccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttggattctaaatccaaatctaaatctaaatcaccgtcacctttgaaaaataaattatcc
cacacaaaagacttgaaaaatcaagactctgaaagtacaagggtgtctgatatgagcaag
agagatccaagattaaaaaaacatcttcaggataagactgatagcaaagatgatgataca
aaggacaagagaaaaactgtagaaaaaaaggagaaagatgagcacgtgaaatcatctgaa
cacagactggtgggaagtagaaataagatcataaatggcattgtacaaaaacaggataca
ataacggaagaatcggaaaagcaggggacaaaaccagggagatcgagtactagaaagcga
tcaagatcgcgatcacccaagtctcggtcaccaattatacattctcccaagagaagggac
aggcggtcacccaaacgaaggcaaaggagtatgtctccaacctcaacccccaaagctggg
aagattcgccagtcaggagttaaacagtcacacatggaagagtttacaccttccagggaa
gaaagaagtgcaaagagaagtactaaacaggatgttcgagatccaaggcgcataaaaaag
actgaagaggaacgaccacaagagactgcaggtcaacattctaccaagtcaggcactgag
ccaaaggagaatgtagaaaattggccaagttccaagtctaccaaaagatggaaatccggt
tgggaagaaaataaaagtttacaacagggtgatgaacatagtaaagctcctcatctaagg
catagggagagctggtcaagcactaaaggaattttgtcacctcgagccccaaagccgcag
catcgattaagtgtagatgccaatcttcagattcctaaagagttaactgttgcaagcaaa
agagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggatgag
ttccttgttgttgtgcatcaaatacgacagctatttcagtatcaagaaggtaaacataga
tgcagtgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctc
ttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggtt
cagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttgact
gatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaat
agtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcct
atatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaagacat
gacgagcaagtctcttctaaaggtgtacgagaagagcagagatcaccattcaatgatcgt
tttccacttaaacgacctagatatgaagattcagacaaaccatttgtagatagccctgcg
tcaagattcgccggccttgatacaaatcagcgacttacggctttagctgaagatagaccg
ttatacgatggacctagcaggccatcagtagcgagagatggcccagccaagatgattttt
gaaggacctaataaattaagccctagaattgatggacctcctacaccgggttctcttcgg
tttgatgggtcaccaggacagatggggggaggtggccctttgagatttgaaggaccacaa
ggccagttaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagttgggaca
ccgctgcgatttgagggtccgattggtcaagcaggaggaggtggcttccgatttgaaggt
tcccctggtctgaggtttgagggatctgcaggtggtttgcgatttgaagggccagggggc
cagcctgtgggcggtctcagatttgaaggacatcggggtcaacctgtgggtggtctgagg
tttgagggacctcatggtcagcctgtgggtggacttcgatttgagaatcctcgaggtcag
ccagtaggtggacttagatttgagggaggtcatggtccctcaggagctgcaatgaggttt
gatggtcctcatggtcagccatcaggtgggatcagatttgagggcccattgttacagcag
ggagttggaatgaggtttgagggcccccatggtcagtcagtagctggtatgaggtttgaa
ggacaacataatcaactcggtgggaaccttaggtttgagggtccacatggtcagccaggg
gttgggatcaggtttgatggaccgttagtccaacaaggaggtggaatgaggtttgagggt
ccttcggtcccaggaggtggcctgagaatcgaaggacctctgggtcaaggtggtccgagg
tttgaaggttgtcatgctttaaggtttgaagggcagccaggtcagtcatcactcctgcca
agatttgatggactgcacggtcagccaggtcctagatttgaaagaactggtcagccaggc
ccacagaggtttgatggacctcctggacagcaggttcaaccaagattcgatggtgtgcct
cagagatttgaaggcccacaacaccagcaagcatcaaggtttgatattcctcttggtctt
caaggcacacgatttgacaatcatccttcacagaggcttgagtcagtatctttcaatcag
actggcccatataatgatccacctggcaatgcttttaatgccccatcccaaggactacag
ttccaaagacacgaacaaatgtttgactcacctcaaggaccaaatttcaatggaccacat
ggccctggaaaccagagtttttccaatccccttaacagagcttctggacactattttgat
gagaagaatcttcagagttctcaatttggcaactttggcaatttacctgctccaataaca
gtaggaaatattcaggcatctcaacaggttctgacaggtgtttctcagccagtagcattt
ggccaaggacagcaatttttgccagttcatccacaaaatcctggagcatttgttcaaaat
ccttcaggagccctgcctaaggcttatcctgataatcatctcagtcaggtggacgtaaat
gaattattttcaaaactgctaaaaacaggaattctcaagttgtcccagcctgattcagct
acaacacaagtaaatgaagttgctgctcagccccctgctgaggaggaggaagatcaaaat
gaagatcaagatgttccagatcttaccaattttacaattgaagaattaaaacaacgctat
gatagtgttataaatcgactgtacactggtattcagtgttattcctgtggaatgaggttt
acaacatcacagacagatgtatacgcagatcacttggactggcattatcgacaaaataga
actgaaaaagatgtaagcagaaaagtcactcataggcgttggtactacagtttaacagac
tggatagaatttgaggaaatagctgatctggaagaacgtgcaaagagccagttttttgaa
aaggtacatgaagaagttgtactcaaaactcaggaggctgctaaagaaaaggagttccag
agtgtaccggctggaccagcaggagcagtcgagagttgtgaaatctgtcaagagcaattt
gaacagtactgggatgaagaggaggaggaatggcatttaaaaaatgctattagagtagat
ggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgt
acaccatctcccagcaagacaccagttgaaaatcccttgaacattatgttgaacattgtc
aaaaacgaattgcaggaaccctctgaaagtcccaaagttaaggaagaacgaattgatact
ccaccagcttgcacagaggaaagcatagcaacagccactgaaattaaaacagaaaatgat
acagtcgagtcagtttaa
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