Capricornis sumatraensis (Sumatran serow): 138085335
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Entry
138085335 CDS
T10522
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum03013
Nucleocytoplasmic transport
csum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138085335 (UPF1)
03015 mRNA surveillance pathway
138085335 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csum03019
]
138085335 (UPF1)
Enzymes [BR:
csum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138085335 (UPF1)
5.6.2.5 RNA 5'-3' helicase
138085335 (UPF1)
Messenger RNA biogenesis [BR:
csum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138085335 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
138085335 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
138085335
NCBI-ProteinID:
XP_068835754
LinkDB
All DBs
Position
9:complement(6192643..6225651)
Genome browser
AA seq
1116 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
GAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEI
CLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDR
MQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTV
LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV
RLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTA
ERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGD
HCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQ
NGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLK
AGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV
RANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGP
LNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQT
HDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQK
NRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSY
LGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcttggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgcgggggccccggtc
ggagccggcccgggcgcggcggccggacagctcgacgcgcaggttggtggccctgagggc
atcctgcagaacggggccgtggacgacagcgtggccaagaccagccagttgttggccgag
ttgaactttgaagaagatgaagaagatacctattacacaaaggatctccctgtacatgcc
tgcagttactgtggaatacatgatcctgcttgcgtggtttactgtaacaccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagg
gcaaaatgcaaagaggtgaccctgcacaaggatgggcccctaggggagacggttctggag
tgttacaactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggccgac
tcggttgtggtgctgctgtgcaggcagccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcccagtggcagcccctgatccaggaccggtgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcacggcagatcactgcccagcagatc
aacaagctggaggagctctggaaggagaacccttctgccaccttggaggacctggagaag
cccggagtggatgaggagccacagcacgtcctcctgcgctacgaggacgcctaccagtac
cagaacatattcgggcctctggtcaagctggaggctgactacgacaagaagctgaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctgacatgcggctcatgcaaggggatgagata
tgcctgcggtacaaaggggacctggcgcccctctggaaagggatcggccatgtcatcaag
gtccctgataattatggtgatgagattgctattgagcttcggagcagtgtgggtgcccct
gtggaggtgactcataacttccaggtggatttcgtgtggaagtcaacctcatttgacaga
atgcagagcgcactgaaaacctttgccgtggacgagacctctgtgtcgggctatatctac
cataaactgcttggccacgaggtggaggatgtgatcatcaagtgccagctgcccaagcgc
ttcacggcacaggggctccccgacctcaaccactctcaggtttacgccgtgaagactgtg
ctgcagcgaccgctgagtctgatccagggcccaccgggcacaggaaagaccgtgacctca
gccaccatcgtctaccacctggctcggcaaggcaacgggcccgtgctggtctgtgctcca
agcaacatagccgtggatcagctgactgagaagatccaccagaccgggctgaaagtcgtg
cggctctgcgccaagagccgcgaggccatagactccccggtgtccttcttggccctgcac
aaccagatcaggaacatggacagcatgccagagctccagaagctgcagcagctgaaggat
gagaccggggagctgtcgtcggcggacgagaagcgttacagagccctgaagcgcactgcc
gagagggagctgctcatgaacgcagatgtcatctgctgcacgtgtgtgggcgcaggagac
ccgaggctcgccaagatgcagttccgttccattttaatcgacgaaagcacgcaggccacc
gagccagagtgcatggtgcctgtggtccttggagccaagcagctgatcctcgtgggtgac
cactgccagctgggccctgtggtgatgtgcaagaaggcggccaaggccgggctgtcgcag
tcgctctttgagcgcctggtggtgctgggcatccgccccatccgcctccaggtccagtac
cggatgcaccccgcgctcagcgccttcccatccaacatcttctacgagggctctctccag
aacggcgttaccgcagcggatcgtgtaaagaaggggtttgactttcagtggccccaaccg
gataaaccaatgttcttctatgtgacccagggccaagaggagattgccagctcaggcacc
tcctacctgaacaggacggaggctgccaacgtggagaagatcaccacgaagctgctgaag
gcgggcgccaagccggaccagatcggcatcatcacgccctacgagggccagcgctcctac
ctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaggtggag
attgccagtgtggacgcgttccagggccgcgagaaggacttcatcatcctctcctgtgtg
cgggccaatgagcaccaaggcattggattcttgaatgaccccaggcgcctgaacgtggcc
ttgaccagagcacgatatggggtcattatcgtgggcaacccgaaggccctgtccaagcag
ccgttgtggaaccacctgctgaactactacaaggagcagaaggtgctggtggagggaccc
ctgaacaacctgcgggagagcctcatgcagttcagcaagcccaggaagctggtcaacacc
atcaacccgggagcccgcttcatgacgacagccatgtatgatgcccgggaggccatcatc
ccagggtcggtctacgaccggagcagccagggccggccctcgaacatgtacttccagacc
cacgaccagatcggcatgatcagtgccggccccagccacgtggctgccatgaacatcccc
attcccttcaacctggtcatgccgcccatgccaccaccggggtattttggacaagctaac
gggccagccgcaggccgaggcaccccaaaaggcaagactggtcgtggggggcgccagaag
aaccgctttgggcttcctgggcccagtcagacgaacctccccaacagccaggccagccag
gatgtggcgtcccagcccttctcccagggcgccctgacccaaggctacatctccatgagc
cagccctcccagatgagccagcccggcctctcccagcctgagctgtcccaggacagttac
cttggggatgagtttaagtcacagatcgacgtggcgctgtcgcaagactccacataccag
ggcgagcgggcgtaccagcacggtggagtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
