Capricornis sumatraensis (Sumatran serow): 138085485
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Entry
138085485 CDS
T10522
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138085485 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csum03019
]
138085485 (XAB2)
03041 Spliceosome [BR:
csum03041
]
138085485 (XAB2)
Messenger RNA biogenesis [BR:
csum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
138085485 (XAB2)
Spliceosome [BR:
csum03041
]
Complex B
Other components
Prp19-related factors
138085485 (XAB2)
Complex C
138085485 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
138085485
NCBI-ProteinID:
XP_068836002
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All DBs
Position
9:complement(16431775..16440501)
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AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcggctctcgaggcccgagcgaccggaccttgtcttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaagtgctggctccgc
tacatcgagttcaagcagggggcccccaagcccaggctcaatcaactgtatgagcgggcg
ctcaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcccgccgggcg
caggtgaagcatcgctgcgtgaccgaccccgcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccccggctgtggctggattactgccagttccta
atggaccagggacgtgtcacgcacacgcgccgaactttcgaccgggccctccgggcattg
cccatcacccagcactctcgtatttggcccctgtacctgcgcttcctgcgctcacacccc
ctgcctgagactgccgtaaggggctaccggcgcttcctcaagctgagccctgaaagcgct
gaggagtatatcgagtacctcaagtcaagcgaccggctggatgaggcagcgcagcgcctg
gccactgtggtgaacgacgagcgcttcgtgtcgaaggccggcaagtctaactaccagctg
tggcacgagctctgtgacctcatctcccagaaccctgacaaggtgcagtctctcaatgtg
gacgccatcatccgcgggggcctcacccgcttcactgaccagctgggcaagctctggtgc
tcactggccgactactacatccgtagcggtcacttcgagaaggctcgggacgtgtacgag
gaggccatccggactgtgatgaccgtgcgggacttcacccaggtgttcgacagctatgcc
caattcgaagagagtatgatcgcagcgaagatggagaccgcctcggagctggggagggag
gaggaggacgacgtagacctggagctacgcctggcccgcttcgaacagctcatcagccgg
cggcccctgctcctcaacagtgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgtgtggccctgcaccagggccgcccccgggagatcatcaatacgtacactgag
gctgtgcagacggtggaccccttcaaggccactggcaagccccacacgctgtgggtcgca
ttcgccaagttttacgaggacaacgggcagctggacgatgcccgagtcatcttggagaaa
gccaccaaggtgagtttcaagcaggtggatgacctggccagtgtgtggtgtgagtgtggc
gagctggagctccggcatgagaactatgaccaggccttgcgacttctgcggaaggcgaca
gcgctgcctgcccggcgcgctgagtactttgatggctcagagcctgtgcagaaccgtgtg
tacaagtctctgaaggtgtggtccatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaggcagtgtatgaccgcatcctggacctgcgcattgctacgcctcagatc
gtcattaactacgctatgttcctggaggagcacaagtactttgaggagagcttcaaggca
tacgagcgcggcatctcgttgttcaaatggcccaacgtgtcggacatctggagtacctac
ctgacgaagttcattgcccgctacgggggccgcaagctggagcgggcacgcgacctcttt
gagcaggctctggatggctgccctcccaaatatgccaagacactgtacctgctgtacgcg
cagctggaagaagagtggggcctggcgcgacacgccatggcagtgtatgagcgtgccacc
agggctgtggagcccgcgcagcagtatgacatgttcaacatctacatcaagcgggcggct
gagatctacggggtcacccacacccgcagtatctatcagaaggctattgaggtgctgtct
gatgagcatgcccgggagatgtgcctgcggtttgctgacatggagtgcaagctcggggag
atcgaccgcgcccgggccatatacagcttctgctcgcagatctgcgacccccggacaacc
ggggccttctggcaaacgtggaaggactttgaggtccggcatggcaatgaggacaccatc
cgggagatgttgcggatccgccgcagcgtgcaggccacgtacaacacacaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagcgccacgggcactgtgtccgacctggcc
ccagggcagagcggtatggatgacatgaaactgctggagcagcgtgcggagcagttggcg
gcagaggcggagcgggaccagccctcaagggcccagagcaagatcctgtttgtgaggagt
gacgcctcccgggaggagctggctgagctggcccagcaggccaacccagaggagattgag
ctgggcgaggacgaggatgaggatgagatggacctggagcccaacgaggtacgcctggag
cagcagagcgtgccagccgctgtgttcgggagcctgaaggaagattga
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