Capricornis sumatraensis (Sumatran serow): 138088977
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Entry
138088977 CDS
T10522
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum04151
PI3K-Akt signaling pathway
csum04510
Focal adhesion
csum04512
ECM-receptor interaction
csum04820
Cytoskeleton in muscle cells
csum04926
Relaxin signaling pathway
csum04933
AGE-RAGE signaling pathway in diabetic complications
csum04974
Protein digestion and absorption
csum05146
Amoebiasis
csum05165
Human papillomavirus infection
csum05200
Pathways in cancer
csum05222
Small cell lung cancer
Brite
Exosome [BR:
csum04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138088977 (COL4A1)
Glycosaminoglycan binding proteins [BR:
csum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138088977 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138088977
NCBI-ProteinID:
XP_068840370
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All DBs
Position
12:complement(92999890..93129961)
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AA seq
1669 aa
AA seq
DB search
MGPRLGVWLLLALAALLLHEESSRAAAKGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVI
GFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPSGVPGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGERGPVGPPGLPGFAGNPGPPGLPGMKGDPGEILGHIPGTLLKGERGYPGQ
PGAPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGEKGDQGVSGPP
GLPGQAQVITKGDTAMRGEKGQKGEPGFPGLQGFGEKGEPGKPGPRGKPGKDGEKGEKGS
QGFPGDSGYPGQPGREGLKGEKGEAGPPGLPGTVIGTGPLGEKGEPGYPGGPGAKGETGP
KGFPGIPGQPGPPGFPTPGLIGAPGFPGDRGEKGEPGLPGVSLPGPSGRDGLPGPPGPPG
PPGQPGHTNGLVECQPGPPGDQGPPGIPGQPGLTGEVGEKGQKGDSCLVCDTAELRGPPG
PQGPPGEIGFPGQPGAKGDRGLPGRDGLEGTPGPQGAPGLMGQPGAKGEPGEIYFDIRLK
GDKGDPGLPGQPGMPGRAGSPGRDGQPGLPGPRGSPGSVGLKGERGPPGGVGFPGSRGDI
GPPGPPGFGPIGPIGDKGQMGFPGNPGAPGQPGPKGEAGKVVPLPGPPGAEGLPGSPGFQ
GPQGDRGFPGSPGRPGLPGEKGAIGQPGIGFPGPPGPKGVDGLPGDAGPPGNPGRQGFNG
LPGNPGPPGQKGEPGVGLPGLKGLPGIPGIPGTPGEKGNVGGPGVPGEHGAIGPPGLQGL
RGDPGPPGLQGPKGAPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPG
PKGDKGSQGLPGLTGQSGLPGLPGQQGSPGQPGIPGPKGEMGVMGTPGQPGSPGPAGVPG
LPGAKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGEKGDQGEKGQTG
PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGIPGAPGLPGPKGSTGGMGLPG
MPGPKGVAGIPGPQGIPGLPGDKGAKGEKGQAGLPGIGIPGRPGEKGDQGLAGFPGSPGE
KGEKGSTGIPGMPGAPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGIKGEAGLPGK
PGPTGPAGQKGEPGSDGIPGSVGEKGEAGLPGRGFPGFPGGKGEKGSKGDVGFPGLAGSP
GIPGSKGEQGFMGPPGPQGQPGLPGTPGHAVEGPKGDRGPQGQPGLPGHPGPMGPPGLPG
LDGLKGDKGNPGWPGTPGAPGPKGDPGFQGMPGIGGSPGITGAKGDTGPPGVPGFHGQKG
APGLQGVKGDQGDQGFPGTKGLPGPPGPPGPFNIIKGEPGLPGPEGPAGLKGLQGPPGPK
GQQGVTGSAGLPGPPGEPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTP
SVDHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAV
HSQTIQIPQCPAGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggctcggcgtgtggctgctgctggcgctcgccgcgctcctgctccacgag
gagagcagccgggccgccgcgaagggtgggtgtgctggctctggctgcgggaagtgtgac
tgccatggcgtgaaaggacagaagggagaaagaggcctcccggggttacagggggtcatc
gggtttcccggaatgcaaggacccgaggggccgcagggaccaccgggacagaagggtgac
accggcgagcccggactgccaggcactaaagggacaagaggaccctcaggagtgcctggt
taccctggaaacccaggacttcctggtattcctggccaggacggtcctccgggtccccca
ggtattccaggatgtaacgggacaaagggtgagagagggcccgtgggacctcccggtttg
cctggattcgctggaaatcctggaccaccagggttaccgggaatgaagggagatccaggt
gagattctgggccatataccagggaccctgctgaaaggcgaaagaggatatcctggacag
ccgggagcgcctggttcaccaggcctgccaggactgcaaggccccgtcgggcccccagga
ttcaccgggccaccaggccctccaggccctcctggccctccaggcgaaaaggggcaaatg
ggcttgagctttcaagggccgaaaggtgaaaagggtgatcaaggggtcagcgggcccccg
ggattaccaggacaggctcaagtcatcacgaaaggggacacagccatgcgcggcgagaag
ggtcaaaaaggtgaacccggatttccggggctgcaagggtttggagagaaaggagaacct
ggaaaaccagggccccgcggaaaaccaggaaaagacggtgaaaaaggagaaaaaggcagt
caagggtttccgggcgattcggggtacccaggacagccaggccgagaaggtttaaaggga
gagaaaggtgaagcaggtcctcccgggctgcctggcactgttattggcacaggacccttg
ggagagaaaggagagcccgggtacccagggggcccaggggcgaaaggggagacaggtccc
aaaggtttcccaggaataccaggccagccaggccctccaggcttcccgactccagggctg
attggtgcccccggcttccccggcgacagaggagagaagggtgaaccgggcttaccaggc
gtgtcgctgccaggacccagcggaagggacgggcttcccggcccccccgggccccccggg
ccccctgggcagccgggccacacaaatggactcgtggaatgccagcctgggccgccaggg
gaccagggtcctcccggaattccagggcagccggggttgacgggcgaagttggagaaaaa
ggtcaaaaaggagacagctgcctcgtctgtgacacagcagagcttcgtgggcccccaggg
ccacagggaccccccggagaaataggtttcccaggacaaccaggggccaagggagacaga
ggcttacccggcagggatggtctggaaggaacgcctggtcctcaaggtgcgccagggctc
atgggccagccgggagccaagggcgagcccggcgagatctacttcgacatacggctcaag
ggcgacaaaggagaccccggcttaccaggccagcccggcatgccaggcagagcgggctcc
cctggaagagacggccaaccgggccttcccggccccagaggctccccgggttcagtagga
ttgaaaggggagcgtggccccccgggaggcgttggattccctgggagccgtggcgacatc
ggccctccggggcctccaggcttcggcccgattggccccattggtgacaaaggacaaatg
ggcttcccaggaaaccctggggcccccggccagccaggtcccaagggagaggcgggaaaa
gttgtgcccttgcctggcccccctggagcagaaggacttcccgggtcccccggcttccag
gggccacaaggtgaccgaggttttcctggaagccctggaaggccgggcctccccggagag
aagggcgccatcggccagcctgggattggatttcctgggcctcccggccccaaaggcgtt
gatggtttacctggcgatgctggacctcctgggaatccgggtcgtcaaggcttcaacggc
ttacctggcaaccccggtccacctggccagaagggcgagcctggagtcggtctgccggga
ctcaaaggcctgcctgggatacctggcatccctggcacccctggggagaagggaaacgtc
ggaggaccaggcgttcctggagagcacggtgccatcggtcccccaggcctccaggggctc
agaggtgacccgggacctcctggattgcaaggccccaaaggagctccgggagtccccgga
atcggcccccctggagcaatgggcccccccggaggacagggacccccagggtcatcaggc
ccccccggagtgaaaggagagaaaggcttccctggcttcccaggtctggacatgccgggg
cccaaaggagacaaagggtcccaggggctccctggcctgacggggcagtcggggctgcct
ggccttcctggacagcagggctcccccggccagcctggcattccaggtcccaagggagag
atgggagtcatggggactccggggcagcccggctcgccaggaccagcgggtgtgccagga
ttgccgggtgccaaaggggaccatggcttccccggctcttcaggacccaggggagaccct
ggcttcaagggtgacaaaggcgacgtggggctccccggaaagccaggctccatggacaag
gtggacatgggcagcatgaagggcgagaagggggaccaaggcgagaaaggacagactggt
ccgactggcgataaaggatcccgcggagacccgggaacgccaggtgtgccgggaaaggac
ggccaggcaggacaccccgggcagccaggacctaaaggtgatccaggtgtgagcgggatc
cctggtgctccaggacttcctggtcccaaaggatccactggtggaatgggcctcccagga
atgccaggaccaaaaggtgtggctggcatccccggcccgcagggcattcctggcttacct
ggagacaagggggcaaaaggagagaaagggcaggcgggtctgcctggcattgggattcca
ggacggcctggggagaagggagaccagggccttgcaggatttcccggaagccccggcgag
aagggagagaaaggaagcacggggatcccagggatgcccggggctccgggccccaaaggc
tccccgggcagtgttggctatccgggaagccctgggttgcctggggagaaaggtgacaag
ggcctcccgggactggatggcattcctggcatcaaaggagaagcaggtcttcctgggaag
cctggccccacgggcccagccggccagaaaggggagcccggcagcgatggaatcccaggg
tcggtgggagagaagggcgaggcaggtctacctggaagaggattcccagggtttccaggg
ggcaaaggagagaaaggttcaaagggcgatgtgggcttcccaggattagctgggagccca
ggaattcctggatccaaaggagaacaaggattcatgggtcccccgggaccacagggacag
ccgggattgccagggaccccaggccacgcggtagaggggcccaaaggagaccgcggcccg
caaggacaacccggcctgccagggcatccgggacccatggggcctccaggcctccccggg
ctcgatgggctgaaaggtgacaaggggaacccaggctggccgggcactccgggagctcca
gggcccaagggagacccaggattccagggcatgccgggcattggcggctctccaggaatc
acaggagctaagggagatacgggacccccaggagttccagggtttcacggtcagaaaggc
gcccccggcctgcagggagtcaaaggtgaccaaggagaccaaggcttcccgggaacgaaa
ggtcttcccggccccccgggccccccaggtccgttcaacatcatcaagggggaaccaggg
ctccctggtcccgagggccccgcgggtctgaaagggcttcagggacctccaggcccgaaa
ggacagcaaggtgtgacgggatccgcgggcttgcctgggcccccaggtgagcccggcttt
gacggcgcccccggccagaaaggagagactgggcccttcggccctcccggtccacgaggc
ttcccgggtccgcccggccccgacgggctgccggggtccatgggtcccccgggcaccccg
tcagtcgatcatggtttccttgtgacccggcacagtcagacgacagacgacccccagtgc
cctcctgggaccaaaatcctctaccacggctactctttgctctacgtgcaaggcaacgag
cgggcgcacggccaggacttgggcacggcgggcagctgcctgcggaagttcagcaccatg
cccttcctcttctgcaacatcaacaacgtctgcaacttcgcctcccgcaacgactactcg
tactggctgtccacgccggagcccatgcccatgtccatggcccccatcaccggggagaac
atccggcccttcatcagcaggtgtgctgtgtgtgaggccccagcgatggtgatggccgtg
cacagccagaccatccagattccgcagtgccccgccggctggtcctcgctctggatcggc
tactccttcgtgatgcacaccagcgccggggctgaaggctctggccaagccctcgcctcc
cccggctcgtgtctggaggagttcagaagcgcccccttcatcgagtgccacggccgcggg
acttgcaattactacgcaaacgcttacagcttttggcttgccacgatagagcggagcgag
atgttcaagaagcccacgccgtccacgctgaaggccggggagctgcgcacgcacgtcagc
cggtgccaggtgtgcatgcggaggacatga
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