Capricornis sumatraensis (Sumatran serow): 138089236
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Entry
138089236 CDS
T10522
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
138089236 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
csum01009
]
138089236 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
csum04515
]
138089236 (PCDH9)
Protein phosphatases and associated proteins [BR:
csum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
138089236 (PCDH9)
Cell adhesion molecules [BR:
csum04515
]
Cadherins
Protocadherins
138089236 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Big_9
MAP17
RCR
V_ATPase_I
EphA2_TM
DUF6249
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
138089236
NCBI-ProteinID:
XP_068840757
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Position
12:complement(49007309..50174755)
Genome browser
AA seq
1237 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNKPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHKKSD
NIPVTPQKCPSSAGFHIQENEEGHYESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
NCWMPPGLGPYQHPKSPLSTFAPQKEWIKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYVS
TEGHFNNGSHMTDIPLANLKSYKQAGGAIESPKEHQL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgctctgattgcctgtttaagactggattcc
gcaatagctcaagaacttatttacactattagagaggaattgcctgaaaatgtacccata
ggaaacataccaaaggatctgaacatttctcacatcaatgctgccacagggaccagcgcc
agccttgtctacagactggtttctaaagctggggatgcccctctggtgaaagtatccagt
agcactggggaaattttcacaacctccaatagaatagacagagaaaaactctgtgctgga
gcctcttatgctgaggagaatgagtgtttctttgaacttgaggtggtgatcctccccaat
gattttttcaggctgatcaaaataaaaataattgtcaaggataccaatgataatgccccc
atgtttccatctcctgtcatcaatatttccatcccagaaaacactttgatcaacagccgc
tttccaattccatcagcaacagatcctgacacaggcttcaatggtgtacagcattatgaa
ttgttaaatgggcagagtgtttttggactggatatcgtggaaactccggaaggagaaaag
tggccgcaattgattgttcagcaaaacttggacagagaacagaaagatacctatgtgatg
aaaatcaaagtagaggatggaggcaccccacaaaagtccagcaccgccatcctgcaggtc
acagtaagtgatgtaaatgacaacaagccagtgtttaaagagggtcaggtggaggtgcac
attccagagaatgctcccgtgggcacctctgtaattcagctccatgccactgatgcagat
ataggcagtaatgctgaaatccggtacatttttggtgcccaggtcgcgcctgcaaccaaa
agactctttgctttaaataatactactgggctgattacagttcagaggtccttagaccga
gaggagacggctattcacaaagtgaccgtactggctagtgatggcagctctactcctgct
agagcaacggttaccatcaatgtcactgatgtaaatgataaccctccgaacatagacctc
aggtacattataagtcccatcaatggcaccgtgtatttgtctgagaaagatcctgtcaat
acaaaaattgccctaattacagtttcagataaggacacagatgtgaatggcaaagtgatc
tgttttattgaaagagaggtcccatttcatttgaaggcagtatatgacaaccaatatttg
ttagagacctcctctttgttggactatgagggcaccaaagaattcagctttaaaatcgtt
gcctctgattctgggaagcccagtttaaatcagactgctctggtaagggttaagcttgag
gatgaaaatgacaacccaccaattttcaaccagcctgtaattgagctgtcagtttctgaa
aacaaccgacgtgggttatacttaacaactattagtgccacagatgaagacagtgggaaa
aatgcagatattgtttatcagcttggaccgaatgcctccttctttgatctggaccgaaag
acaggagttttgacagcctctagggtctttgacagagaagaacaagaaagattcattttt
acagtaactgccagggacaatgggacccctcccctccaaagtcaagcggctgtgatagtt
actgttctggatgagaatgacaatagccccaagtttactcataatcattttcaatttttt
gtgtctgagaatctgccaaagtatagtactgtgggggtaatcacagtgacagatgcagat
gctggagagaataaagctgtgactctttccattctaaatgacaatgataattttgtgttg
gatccctattctggagtcataaagtcaaatgtctcatttgacagagagcagcagagttcc
tacacttttgatgtcaaagccactgatgggggacaaccaccccgttcctctactgcaaaa
gtaactataaatgtcatggatgtcaatgacaatagtcctgttgtcatttcaccaccttct
aatacttcttttaagttggtgcctctctcagccattcctggctcagtggtagcagaagtt
tttgcagtggatattgacactgggatgaacgctgaacttaagtatacaattgtgagtggt
aacaacaaaggcttgtttcggattgatccagtaacaggtaacatcaccctggaagaaaaa
ccagcaccaactgatgtgggcttgcaccgattggtggtcaacataagtgacttgggatac
cctaagtctctacacacacttgtgcttgttttcctttatgttaatgacactgctggcaat
gcttcctatatctatgacttgattcgcaggactatggagaccccattggacagaaacata
ggggatagcagccaaccctatcaaaacgaggactatctgaccatcatgatcgccatcgtc
gcaggtgccatggtggtgatcgtcgtgatctttgtcactgttctggtgcgctgtcgccat
gcatcaagattcaaagcagctcaaaggagcaagcaaggtgccgaatggatgtccccaaac
caggagaacaaacaaaacaagaaaaagaaaaggaagaaaagaaaatctcccaagagctct
cttttgaactttgttaccatcgaagagtccaaacccgatgatgcagttcacgaacctatc
aatgggacaataagcctgccggctgagttggaggagcaaagcataggaagatttgactgg
ggcccggcacctccaaccaccttcaagccgaacagccctgacctggccaagcactacaaa
tccgcttctccacagcctgctttccatcttaaaccagacactccggtttcggtgaaaaag
catcacgtgattcaggagctcccgttggacaacacctttgtcgggggttgtgacaccctt
tccaaacgctcttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacagtgtaactcacacaaaaaaagtgac
aatattcctgtcactcctcagaaatgtcccagctctgcgggtttccatattcaggagaat
gaagaaggccattacgagtcgcagcgccgggttacctttcacctccccgacggctcccag
gaaagctgcagtgacagtggtctaggagaccacgagccggtgggtagtggaaccctgatc
tcacaccctcttcctctggttcagccacaggacgaattctatgaccaggcctctccggac
aagaggaccgaagcagacggcaactctgaccccaactctgatgggcccttgggcccccga
ggattagctgaagctacagagatgtgcactcaagagtgcttggttttgggtcactctgat
aattgctggatgcctcctggcttgggtccatatcaacaccctaaatctcctctctcaacc
tttgcaccccaaaaagaatggatcaagaaggacaagcttgtgaatgggcacaccctgacc
agagcctggaaagaagatagcaacaggaaccagttcaatgaccgtaagcagtatgtctcc
actgaaggccatttcaacaatggcagccacatgacagacattcctttggcaaatctgaag
tcttataagcaagcaggaggtgctattgagagtcctaaggagcaccaactctaa
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