Capricornis sumatraensis (Sumatran serow): 138089298
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Entry
138089298 CDS
T10522
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
138089298 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
csum01009
]
138089298 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
csum04515
]
138089298 (PCDH20)
Protein phosphatases and associated proteins [BR:
csum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
138089298 (PCDH20)
Cell adhesion molecules [BR:
csum04515
]
Cadherins
Protocadherins
138089298 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
He_PIG
Motif
Other DBs
NCBI-GeneID:
138089298
NCBI-ProteinID:
XP_068840837
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All DBs
Position
12:10552973..10556834
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AA seq
951 aa
AA seq
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MRGGGDACGLRVGAVSWSRATWRPRPDMGSLSRPSSSASHGNLPHLLLFFLVVRPFNCLA
SYSRATEILYSLNEGLPAGVLIGSLAEDLRLLPSAGGQDLQSQSPQHSVAERNPPLSFSL
ASQGLSGQYVTLDNRSGELHTSAQEIDREALCLEGGRGTAWGGSISISSSPSADSCLLLL
DVLVLPQEYFRFVKVKIAIRDINDNAPRFPISQISVWVPENAPVNTRLAIEHPAVDPDMG
TNGVQTYRLLDYHRMFTLDVEENENGERTPYLIVMGLLDRETQDQYVSIIIAEDGGSPPL
IGSATLTIGISDINDNCPLFTDSQINITVYGNATVGTPIAAVQAVDRDLGNNAQITYSYS
QKVPQASKDLFHLNENTGVIKLFSKIGGSVLQTHKLTILANGPGCIPAVITALVTIIRVI
FRPPEIIPRYIANEIDGIIYLKELEPINTPIAFFTIRDPEGKYKVNCYLEGEGPFRLLPY
KPYSNEYLLETTKPMDYELQQFYEIAIVAWNSEGFQVKKMIKVQLLDDNDNAPVFLQPLV
ELTIEENNAPNAFLTKLDATDADSGERGQVSYFLGPDAPSYFSLDSVTGILTVSTQLDRE
EKETYRYTVRAVDSGKPPQESVATVIITVLDKNDNSPRFINKDFSFFVPENFPGYGEIGV
ISVTDADTGQNGWVALSVVNQSDIFVIDTGKGLLRAKVSLDREQQSSYTLWVEAIDGGMP
PLSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSLVTEVYAVDKDTGMNAVI
AYSIIGRRGPRPESFRIDPKTGNITLEEALLQTHYGLHRLLVKVSDHGYPEPLHSTVMVN
LFVNDTVSNESYIENLLRKEPEISIEEKEPQISIEPTQRKGESVSCMPTLVALSVISLSS
ITFLTGMGIYICLRREKKHHRENENLEVQTPLKGKIDLHMRERKPIDISNI
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggcggcggggatgcgtgcggcttgcgggtcggggcagtgagctggagtcgggcg
acctggcgcccgcgcccggatatggggagtctcagtcgtcctagcagcagcgccagccac
ggaaacctgccgcatctgcttctgtttttcctcgtcgtgagaccgttcaactgtctggcg
agttacagccgggccacggagattctgtacagcctgaacgaggggctaccggcgggggtg
ctcatcggcagcctggcggaggacctgcggctgctgcccagcgccggggggcaggacctg
cagtctcagtcgcctcagcacagcgtcgccgagaggaaccctcctctctccttcagcctg
gcatcccaggggctgagtggccagtacgtgaccctcgacaaccgctcaggggagctacac
acttctgcccaggagatcgaccgtgaggccttgtgtcttgaaggaggcagagggactgcc
tgggggggcagcatttccatctcctcttcgccttcggctgactcttgtcttttgcttctg
gatgtcctagtcctgcctcaggaatactttaggtttgtgaaggtaaaaatcgctatccgg
gacatcaatgacaatgccccgcggtttcctatttcccaaatatcagtttgggtcccagaa
aatgcacctgtaaacacccggctggccatagagcatcctgccgtggacccagatatgggc
actaatggtgttcagacctaccgcttgctggactaccatcgtatgttcaccctggacgtg
gaggagaatgagaatggggagcgcaccccctacctaattgtcatgggactgttggacaga
gagacccaggaccaatatgtgagtatcatcatagctgaggatggtgggtccccaccactg
ataggcagtgccaccctcaccattggcataagtgacattaatgacaattgcccactcttc
acagactcacaaatcaacatcaccgtgtatgggaatgctactgtgggcacaccaattgca
gctgttcaggctgtggacagagacttgggaaacaatgctcagatcacctactcttacagt
cagaaagttccacaagcatccaaggatttattccatttgaatgaaaacaccggggtcatt
aaacttttcagtaagattggaggaagtgttctgcaaacacacaagctcaccatccttgct
aatggaccaggctgcatccctgctgtgatcactgccctggtgactattatcagagtcatt
ttcaggccacctgaaatcatccctcgttatatagcgaatgagatagatggtattatttac
ctgaaagaattggaacctattaacactccaattgcattctttaccataagagatccagaa
ggtaaatacaaggtaaactgctatctggaaggtgaaggaccatttaggttattgccctac
aaaccatatagtaatgagtatcttctagaaacaacaaaacctatggattatgagctacag
caattctatgaaatagccatagtagcttggaactctgagggatttcaagttaaaaaaatg
attaaagtgcaacttttagatgacaatgataatgctcctgttttccttcaacccttggta
gaactaaccattgaagaaaataatgcacccaatgcctttttgactaagctagatgctaca
gatgctgacagtggagagaggggccaagtttcatattttctgggacctgatgctccatca
tatttttccttagacagtgtcacaggaattctgacagtttctactcagctggatcgagag
gagaaagaaacgtataggtacacagtcagagctgttgactctgggaagccaccccaagaa
tcagtagctactgttattatcacagtgttggataaaaatgacaacagccctaggttcatc
aacaaggacttcagcttcttcgtgccagaaaattttccaggatatggtgaaattggagtg
attagtgtcacagacgccgatactgggcaaaatggatgggttgctctctccgtggtgaac
cagagtgatatttttgtcatagacactggaaagggcctgctgagagctaaagtctctttg
gacagagagcagcaaagctcctacactttgtgggttgaagccatcgacgggggtatgcct
cccctctcctctactgcaaaaatcacaattctccttctagatattaacgacaacccgcct
ctcgttttatttcctcagtctaacatgtcttacttgttggtgttgccttctactctccct
ggctcactagttacagaggtctacgcagttgacaaagacacaggcatgaatgctgtcata
gcctatagcatcatagggagaagagggcctaggcctgaatcctttagaattgaccctaaa
actggcaacattactttggaggaggcattgctgcagacacattatgggctccatcgttta
ttggtgaaagtgagtgatcatggttatccagaacctctccattccacagtcatggtgaat
ctatttgtcaatgacactgtcagtaatgagagctacattgagaatcttttaagaaaggaa
ccagaaattagcatagaagagaaagaaccacagatttcaatagaaccaactcaaaggaaa
ggtgaatccgtgtcctgtatgcccacattagtagctctatctgtaataagcttgagttct
atcacattcttaacagggatgggcatatatatctgtttaaggagagaaaagaaacaccat
agggagaatgaaaatttggaagtacaaactccattaaaaggaaaaattgacttgcatatg
agagagaggaaaccaatagatatttctaatatttga
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