Capricornis sumatraensis (Sumatran serow): 138089638
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Entry
138089638 CDS
T10522
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138089638 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csum03041
]
138089638 (CDC40)
Spliceosome [BR:
csum03041
]
Complex C
Other components
Step II factors
138089638 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_2nd
WDR55
EIF3I
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
DSE1_N
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
ANAPC4_WD40
ASA1
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_SPT8
PAC11
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_NOL10_N
TRM82_WD
Beta-prop_SCAP
CFAP251_N
Beta-prop_ACSF4
UCP007778
Beta-prop_NWD2_C
WD_LRWD1
WDR54
Beta-prop_Vps41
YJR039W_M
PQQ_2
Motif
Other DBs
NCBI-GeneID:
138089638
NCBI-ProteinID:
XP_068841166
LinkDB
All DBs
Position
13:complement(27729584..27775783)
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AA seq
579 aa
AA seq
DB search
MSAAIAALAASYGSGSGSESDSDSEGGRCSLPAADSLMHLTKSSSDKPSLAVAVDSAPEV
AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSTKYIGSVEEAEKNQGLTVFETGQKKIEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgcgattgcagctctcgctgcttcttatggttcgggttcagggtccgaatcg
gactcggacagtgagggcgggcggtgttccttgccagccgcggattccctcatgcactta
actaaatcgtcttcggataagccctctctggcagtggcagtggactccgctccggaggtg
gcagttaaggaagatttggagactggagttcaccttgaccctgctgtcaaagaggttcag
tataatcccacctatgagaccatgtttgctcctgagtttggaccagaaaatcccttcaga
acccagcaaatggctgcccctagaaatatgctttctggatatgctgaaccagcccatatc
aatgattttatgtttgaacagcaaagaagaacttttgccacttatggttatgcattggac
ccttcattagataatcatcaagtgtctactaagtatattggttctgtagaagaagctgaa
aaaaaccaaggtttaactgtgtttgaaactggtcagaagaaaatagaaaagaggaaaaaa
tttaaagaaaatgatgcatctaatattgatggcttcttgggaccatgggcaaaatatgtg
gacgaaaaagacgtagccaaaccttcagaagaagaacaaaaagaattggatgaaattaca
gcaaagaggcagaagaaaggtaaacaggaagaagagaaacctggagaggaaaagacaatc
ttacatgttaaagaaatgtatgactatcaaggcaggtcctatcttcacatacctcaggat
gttggtgttaatctgcggtcaactgtgccacctgagaaatgttatcttcctaaaaaacaa
attcatgtgtggtctggacatacaaagggcgtcagtgcagtcagattgtttcctctctct
ggccatttgttgctgtcttgttccatggactgtaaaattaagctatgggaagtttatgga
gacaggcgctgtctacgaacatttattggtcacagtaaagctgttagggacatctgcttt
aatactgcaggaacacagttcctcagtgcagcttatgacaggtatcttaagctctgggac
actgagacaggacagtgtatatcaagatttacaaaccgaaaagtaccttattgtgtcaaa
tttaatcctgatgaagataagcaaaatctctttgtggctgggatgtctgataagaagatt
gtgcaatgggacattcgaagtggagaaattgtgcaggaatatgatcggcatttgggagct
gtcaacaccattgtttttgtcgatgagaataggagatttgtaagcacatccgatgataag
agcctaagagtttgggaatgggatatccctgtggatttcaagtatatagcagaacccagt
atgcactcaatgcctgcagtgactttgtctccaaatgggaaatggctagcgtgccaatca
atggacaaccaaatcttaatttttggagcacagaacagatttagattgaataagaagaaa
atttttaagggccatatggtagcaggctatgcttgtcaagtagacttttcaccagacatg
agctatgtgatttcaggagatggaaatggaaagttaaacatctgggactggaagaccaca
aaactctacagtagatttaaagctcacgataaagtgtgtataggtgcagtgtggcatcct
catgaaacatctaaagtcataacttgtggttgggatggtctcattaaattgtgggattaa
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