Capricornis sumatraensis (Sumatran serow): 138097528
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Entry
138097528 CDS
T10522
Name
(RefSeq) LOW QUALITY PROTEIN: NPC intracellular cholesterol transporter 1-like
KO
K12385
Niemann-Pick C1 protein
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
csum04142
Lysosome
csum04979
Cholesterol metabolism
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
138097528
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
138097528
09150 Organismal Systems
09154 Digestive system
04979 Cholesterol metabolism
138097528
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
csum02000
]
138097528
Transporters [BR:
csum02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
138097528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
138097528
NCBI-ProteinID:
XP_068849836
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Position
21:35811029..35880610
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AA seq
1300 aa
AA seq
DB search
MGERTEFGRKVFSQSCIWYGECGIASGDKRYNCRYSGPPNPLPHNGYDLVQELCPGFFFG
DVRLCCDVQQLHTLKDNLQLPLQFLSRCPSCFYNLVNLFCELTCSPRQSQFLNVTATEDY
VDPTTNETRTNVKELQYYVGERFANAMYNACRDVEAPSSNEKALGLLCGREASACNATNW
IQYMFNKDNGQAPFTITPVFSDLPTHGMQPMNNATKGCDESVDEVTGPCSCQDCSAVCGP
KPQPPPPPVPWRILGLDAMYVIMWSTYMAFLLVFFGVFFAVWCYRKRYFVSEFTPIDGNI
PFSINASDKGGPSCCDPLGAALEAHLRRLFERWGSFCVRHPGCVVLFSVAFIAACSSGLV
FIQVTTNPVDLWSAPGSQARQEKEYFDTHFGPFFRTEQLIIRAPHTPPHTYEPYPSGADV
PFGPPLAIDILHQVLDLQTAIESITASYNNETVTLRDICVAPLSPYNQNCTVLSVLNYFQ
NSHSVLDHQVGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGG
YDDQNYSNATALVITFPVNNYYNDTEKLQRAQAWEREFINFVKNYENPNLTISFKAERSI
EDELNRESNSDIFTVLISYGIMFLYISIALGHIKSCRRLLVDSKISLGIAGILIVLSSVA
CSLGIFSYIGVPLTLIVIEVIPFLVLAVGVDNIFILVQTYQRDERLQGETLDQQVGRVLG
EVAPSMFLSSFAETVAFFLGGLSVMPAVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKR
QEKNQLDVLCCVEGAADDTGVQASESCLFRFFRNSYAPLLLKDWMRPLVVAVFVGVLSFS
IAVLNKVEIGLDQSLSMPDDSYVTDYFRSLNQYLHAGPPVYFVLEEGHDYTSTKGQNMVC
GGLGCNNDSLVQQVFTAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRIYNSTEQFCNA
SVVDPACVRCRPLTPEGKQRPQGVDFMRFLPMFLSDNPNPKCGKGGHAAYSAAVNILDNG
TSVGATYFMTYHTVLQTSADFIDAMEKARLIANNITRTMNQQGGDHRVFPYSVFYVFYEQ
YLTMIDDTVFNLGVSLGAIFLVAVGLLGCELWAAGVMCATIAMILVNMFGVMWLWGISLN
AVSLVNLVMSCGISVEFCSHITRAFTVSTKGSRVERAEEALSHMGSSVFSGITLTKFGGI
IVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSINKAKSLTTQQXYRGT
EPEQLLNFSCPLTDLRLCLRVGWFTTGQQPRRQGSVEPWT
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgggggaaaggactgagtttggcaggaaggtattttcacaatcctgcatttggtatggg
gagtgtggaatcgcatctggagataagagatacaactgcagatattctgggccaccaaat
ccattgccacataatggctatgacctagtgcaggagctctgtccagggttcttctttggc
gatgtcaggctttgctgtgatgtccagcagcttcacacactgaaagacaacctgcagctg
cctctgcagtttctgtccagatgtccatcctgtttttataacctagtgaacctgttttgt
gagctgacatgtagccctcgacaaagtcagtttctgaatgttacagcaactgaagattat
gtggatcctactacaaatgagacgagaacaaatgtaaaagaattacagtactatgttgga
gagcgttttgccaatgccatgtacaacgcctgccgggatgtggaggccccctcgagcaat
gagaaggccctggggctgctgtgtgggcgtgaggccagcgcctgcaatgctaccaactgg
atccagtacatgttcaacaaggacaatggccaggcgcccttcaccatcacccctgtcttt
tcagatcttccgacccatgggatgcagcccatgaacaatgccaccaagggctgtgacgag
tcggtggacgaggtcacggggccgtgcagctgccaggactgctcggctgtctgtggcccc
aagccccagcccccgccccctcccgttccctggagaatcctgggtctcgacgcaatgtac
gtcatcatgtggagcacctacatggctttcctgctcgtgttttttggagtgttctttgct
gtgtggtgctacagaaaacggtattttgtctctgagtttacccccattgatggcaatata
cctttctctataaacgctagtgacaaaggggggccaagctgctgtgaccctctgggcgcc
gccttggaggcccatctgcggcggctcttcgaacggtggggctccttctgtgtgaggcac
cccggctgtgtcgtgttgttctccgtggccttcatcgccgcctgttcctcaggcctggtg
ttcatccaggtcacaaccaacccggtggacctctggtcggcccccggcagccaggcccgc
caggagaaggagtacttcgacacgcacttcgggcccttcttccgcacggagcagctcatc
atccgggccccccacaccccgccacacacatacgagccctacccctccggagccgacgtg
cccttcgggcctcccctcgccatagacattctgcaccaggtccttgacttacaaaccgcc
atcgagagcatcactgcttcttacaacaacgagactgtgaccctgcgggacatctgcgtg
gcgcccctctcgccatacaaccagaactgcaccgtcctgagcgtgctgaattacttccag
aacagccactccgtgctggaccatcaggtcggggatgacttcttcgtgtacgcggattac
cacacgcacttcctctactgcgtccgggctcctgcttccctgaatgacaccagtttgctc
cacgatccttgcctggggacgtttggtggcccagtgttcccatggcttgtgcttggaggc
tatgatgatcaaaactacagtaacgccacagcccttgtgatcacttttcctgtcaataat
tactataacgatacagagaagctccagagggcccaggcctgggaaagagagttcattaat
tttgtgaaaaactacgagaatccaaatctgaccatttcttttaaggctgaacgaagcatt
gaagatgaactaaaccgtgaaagtaacagtgacatcttcactgttctgatcagctatggc
atcatgtttttatatatttccatagccttggggcatatcaaaagctgtcgcaggcttctg
gtggattcgaaaatctccctgggcattgccgggatcctgattgtgttgagctcagtggcc
tgctccttgggcatcttcagctacatcggggtccccctgaccctcattgtgatcgaagtc
atcccattcctcgtgctggctgtgggggtggacaacatcttcatcctggtccagacctac
cagagagatgaacgtcttcaaggggaaaccctggaccaacaggtgggccgggtcctggga
gaagtggctcccagcatgttcctctcatccttcgcagagacggtagcatttttcttagga
ggcctgtccgtgatgccggccgtgcacacgttctctctcttcgcgggcatggcggtcctc
atcgacttcctcctgcagatcacctgcttcgtgagcctcctgggcttggacattaagcgg
caagagaagaaccagctggacgttctctgctgtgtcgagggggcggcagacgacacaggc
gtccaggcctccgagagctgcttgttccgcttcttcagaaactcctacgccccgcttctg
ctcaaggactggatgcggcccctcgtggtagcagtgtttgtgggtgtgctgtcgttcagc
atcgcagtcctgaacaaagtagagatcggattggatcagtctctttcaatgccggatgac
tcctacgtgacggattacttccggtccctgaatcagtacctgcacgcaggcccacctgtg
tactttgtgctggaggagggccatgactacacgtccacgaagggtcagaacatggtgtgt
gggggcctcggctgcaacaacgactcgctggtgcagcaggtcttcacggccgcccagctg
gacaactacacccggataggctttgccccgtcgtcctggattgatgattactttgactgg
gtcaagcctcaatcatcttgctgtcgcatctacaacagcacagagcagttctgcaatgcg
tcagtggtcgaccctgcctgtgtccgctgccggccgctgactccggagggcaagcagaga
cctcagggcgtagacttcatgaggttcctgcccatgttcctctctgacaacccgaacccc
aagtgtggcaaagggggacatgctgcctacagcgcggccgtcaacatcctggacaacggc
acgagcgtgggagccacatatttcatgacctaccacacggtgctgcagacctcggctgac
ttcatcgatgccatggagaaggcccgcctcatcgccaacaacatcaccaggaccatgaac
cagcaagggggtgatcaccgggtgttcccatacagcgtgttctacgtcttctatgagcag
tacctgaccatgattgacgacactgtcttcaacctcggcgtgtccctgggcgccatcttc
ctggtggccgtgggcctcctgggctgtgagctgtgggccgcgggcgtcatgtgcgccacc
atcgccatgatcctcgtcaacatgttcggcgtcatgtggctgtggggcatcagcctgaac
gcggtttctctggtcaacctggtcatgagctgcggcatctccgtggagttctgtagccac
atcacgagggctttcacggtgagcacgaagggcagccgcgtggagcgggcagaggaggcg
ctctcccacatgggcagctctgtattcagtggaatcacactaacgaaatttggaggcatt
atcgtgttggcctttgccaaatctcaaattttccagatattttacttcaggatgtattta
gctatggtcttactgggagccactcatggactaatattcctccctgtcttactcagttac
ataggaccgtcaataaataaagccaaaagtctgaccacgcagcagtgatacagaggtaca
gagccagaacagctcctcaactttagctgccccctcacggacttgagactgtgtctgcga
gtcggttggtttaccactggacagcaaccgcgtcgtcaaggctcggttgaaccctggacg
tga
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