Chryseobacterium suipulveris: MTP09_01515
Help
Entry
MTP09_01515 CDS
T08539
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csup
Chryseobacterium suipulveris
Pathway
csup03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MTP09_01515 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csup03400
]
MTP09_01515 (mfd)
Enzymes [BR:
csup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTP09_01515 (mfd)
DNA repair and recombination proteins [BR:
csup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MTP09_01515 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
UOE41350
LinkDB
All DBs
Position
296381..299764
Genome browser
AA seq
1127 aa
AA seq
DB search
MQLKKINENFLPEILKNEFGKEIFSQINQAQHLSVQGFAGSSPSVFAAELFVVRKNSVLF
LTDDKEDALYIIAELEDLLGKENVLYFPPSHLEPYQIEKTQNANLVLRTEVLNNIHNDKK
PQVMVAAFSSLAEKVMKKEDFKAISHTIKVGDSLDFDFTEELLNHFNFTLTDFVSEPGEF
SVRGGIVDVFSYSNEEPYRITFFGNEVESIKTFDIETQLSKEKIKEFQLVSNMNFSVSGT
KVSLFELAPKNLTVITKNAGIGFNIIQNFYEKAEGKFETLSKEIKHQKPAELFVSEEHFI
NDIKKFSWIDFSQHQTKELEKSPIVLLKQTPQPTFHKNFELLIEDLKEKKDNGFGIWISF
SGEKQEDRLRSILHEVDPLSFGEGRGEDFKSFKSELHEGFVDLEHKISVYTDHQIFDRYQ
RFKAKNAFAKSEQLTLKDLMQMKVGDYITHIDHGIGKFMGLVKVNNNGKIQECFKLVYKN
GDLLYVSIHSLHKISKYNGPDGKEIVLSKLGSPAWKSLKQKTKAKVKQIAFDLIKLYAKR
KATKGFAFAPDSYLQNELEASFIYEDTPDQEKATVDVKKDMENDTVMDRLICGDVGFGKT
EVAIRAAFKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNISYMNRFRTAKQKSET
LEGLKNGKIDIVIGTHQLVGSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNIDTLTLT
ATPIPRTLQFSLMAARDLSVIKTPPPNRQPVDTQLIGFSEEILRDAISYEIQRDGQVYFI
NNRIENLKDIAGMIQRLVPDAKVITGHGQMEGKQLEQNVLDFMEGKYDVLVSTTIVESGV
DVPNANTIFINDAQKFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAIEQ
FSDLGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGFDTYQKIMQEALEELQNDEEFDNL
FENEEDRKKLFKSTKEVNIDTDLELMLPDSYVSSIEERLSLYQKLAEIQDRNELQIFENE
LKDRFGNLPKEAKNLLKSVELKWMGAEIGFEKIVVKNGVFLGYFPGNPQDKFYQSDKFRH
IISYLGKNPTEATLKEKQSKEGNQLMMRKEHVTNVDEVNTVLERILN
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaaaaaatcaacgaaaacttcttaccagaaattcttaagaatgaattcggt
aaggaaattttcagccagatcaatcaagctcaacatctttcggttcagggttttgcggga
tcgtcgccatcggtttttgcggcggaacttttcgtggtgaggaagaattccgttttattt
cttaccgatgataaagaggatgcgctctacatcatcgccgaactcgaagatttgctgggt
aaggaaaatgtgctgtattttcctccgagtcatttggaaccttatcaaatcgagaaaacc
caaaacgcaaacctcgttttgcggacggaagttttaaacaatatccacaatgacaaaaaa
ccgcaggtgatggtcgctgcgttttcttcactcgctgaaaaagtgatgaagaaagaagat
ttcaaagcgatttcgcacacgataaaagttggcgattctttggatttcgactttaccgaa
gaattgctcaaccatttcaattttactttgacggatttcgtttccgaacctggcgagttc
tctgtgagaggagggattgtggatgttttttcgtattccaatgaggaaccataccgaatt
acttttttcggcaatgaagtcgaaagtatcaagactttcgatattgaaacccagctttca
aaagagaaaattaaagagtttcaattagtttcgaatatgaatttttcggtttcgggaacg
aaggtttcactttttgaactcgcgccgaaaaaccttaccgtcattaccaaaaatgcggga
atcggctttaacatcattcaaaatttctatgagaaagcggaaggaaagtttgaaacttta
agcaaggaaatcaagcaccaaaaacccgccgagctatttgtttctgaagagcatttcatt
aatgatatcaaaaaatttagctggatcgacttttcgcaacatcagacaaaggaacttgag
aaatcgccgatcgtactcctaaaacaaactccgcaaccaactttccataagaatttcgaa
ctattaattgaagaccttaaagaaaaaaaagataatggatttggaatttggatttcattt
tcgggtgaaaaacaagaggatcgtctgcgttcaattttgcacgaggttgaccccctctcc
tttggagagggacggggagaggattttaaatcctttaaatccgaacttcacgaaggtttt
gtggatttggaacataaaatttcggtgtacacggatcatcagatttttgaccgataccaa
aggtttaaggccaaaaacgcttttgcaaaatcggaacaacttacactgaaagatctgatg
cagatgaaagtcggcgactacatcacgcacatcgaccacggaatcgggaagtttatgggt
ttggtgaaagtgaacaacaacgggaaaattcaggaatgcttcaagctcgtctataaaaac
ggcgatttgttgtatgtctcgattcactcgctccacaaaatctcgaaatacaacggtccc
gacggaaaggaaatcgtgctttccaaactcggttctcccgcttggaaatctctaaaacaa
aagacgaaagccaaggtaaagcagatcgcgtttgacctgatcaagctttatgcgaaaaga
aaagccaccaaaggttttgccttcgctccagattcttatctacaaaacgaacttgaggcg
agtttcatttacgaagacactcccgatcaggaaaaagcgactgtggatgtgaaaaaagat
atggaaaacgacacggtgatggatcggctgatttgtggcgacgtaggtttcgggaaaacg
gaagtcgcgattcgtgcggcgttcaaggcggcaaccgacggaaaacaggttgcggttttg
gttcccacgacgattcttgcgtttcagcattaccgaagttttaaggaaagattgaaagat
ttcccggtgaacatttcgtatatgaaccgcttccggactgcaaagcagaaatccgaaact
ttggaagggctgaaaaacggcaagatcgacatcgtcatcggaacacatcaactggttgga
agcagtgtgaaattcaaggatttgggacttttaattattgatgaagaacacaaattcggc
gtatcggtaaaagacaaactgaaaactctgaaatcaaatatcgacacgttgactttaacg
gcgactccgattccgaggacgctccagttttcgctgatggcggcaagagatttatcggtg
atcaaaacgccacctccgaacaggcaacctgttgatacgcagttgattggctttagtgaa
gaaattctgagggatgcaatttcctatgaaatccagcgtgatggacaggtttatttcatc
aacaacagaattgaaaacctgaaggatattgcgggaatgattcagcggctggttcccgac
gcaaaagtcatcacgggacacggacaaatggaaggaaagcagctggagcagaacgttctc
gattttatggaagggaaatatgatgtgcttgtttctaccacgattgttgaaagtggagtg
gatgttcccaatgcaaacacgattttcatcaatgatgcgcagaagtttggaatggccgat
ctgcaccaaatgcgcggaagagttggtcggagcaacagaaaggcgttctgctatttgatt
acacctccgttcgatatgatgacttctgatgcgagaaaacgtttggaagcgatcgaacaa
ttttcagatttgggaagcggtttccagattgcgatgaaggatttggaaattcgcggtgca
ggagatttgctcggcggtgaacaaagcggtttcatcaacgagatgggattcgacacgtac
cagaaaattatgcaggaggcactggaagaactacaaaacgatgaggagttcgataatctt
ttcgaaaacgaagaagaccgtaagaaacttttcaaatccacaaaggaagtcaatatcgat
accgatttggagctgatgttgcccgattcctatgtttcgagtattgaggaacggctttcg
ctttaccagaaattggcggaaattcaagacaggaatgaacttcaaattttcgaaaatgaa
ttgaaagatcgttttgggaatttgcccaaagaagcaaaaaatcttttgaaatcagtcgag
ttgaaatggatgggcgcggaaatcggcttcgagaaaattgtggtaaagaacggagttttt
ctgggatattttcctggcaatccgcaggataagttttaccaaagcgataagttcaggcac
atcatttcgtatttagggaagaatccgaccgaggcaacattgaaggaaaaacagtccaaa
gaagggaatcagctgatgatgcggaaggagcatgtgaccaatgtggatgaggtaaatacc
gtgttggaaaggattttaaactga
DBGET
integrated database retrieval system
