Chryseobacterium suipulveris: MTP09_06675
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Entry
MTP09_06675 CDS
T08539
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
csup
Chryseobacterium suipulveris
Pathway
csup03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MTP09_06675 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csup03400
]
MTP09_06675 (ligD)
Enzymes [BR:
csup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MTP09_06675 (ligD)
DNA repair and recombination proteins [BR:
csup03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MTP09_06675 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UOE42314
LinkDB
All DBs
Position
complement(1399366..1401906)
Genome browser
AA seq
846 aa
AA seq
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MSLKEYNKKRDFKQTSEPAGIPENSGEKLRFVVQRHAASHLHYDFRLEMDGVLKSWAIPK
GPSLNPKDKRLAMMVEDHPFSYRTFEGTIPKGNYGAGEVEIWDEGWYEPLNKIKGKTDDL
VMRAELHKESLKFVMHGKKLQGEFALVKIKNSDDGKSWLLIKHKDDFATDFYNAEENTSE
NSKVTAALKKKSEKDVSENTARSYKNYAPALSKEKKLKKFIEPMLAKPSDNKPFDSKDWA
FEIKWDGYRAIADLRDGIQLYSRNGLDFSAKFKKIVNQLGLQQHEMVLDGELVAYDNMGK
PNFQWLQNIGEKPNTPIIFQVFDLLFLNGHSTRSLTYLERKELLKDALKETENIKFCDHI
LEKGKEFFRLAEQMGLEGIIAKKTESTYSDGIRSSEWLKIKTQQTDEVIICGFTEPKGSR
KHFGSLILGNYIDGELTFSGHIGTGFSDKTLKELYGVMHPLIVEKSPFKTLPKTNGKATW
LKPELIAEIKYSEKTKDGIFRHPVFLHLREDKEVSDLKEDQQTPEQPMEKKSTKPVKTAV
TTRENEAKTKIGKQEVKLTNQNKIYFPKDNVSKGDVVAYYQSVAEFILPHLKNRAQSLNR
FPNGIDGMSFYQKDAADETPDWIETHKIYSDSNDKYINYIICNDAATLAYLNNLGCIEMN
VWTSRIDNIENPDYLALDLDPSDNNTFEDVIATAKEVKKVLDKAKIEGYPKTSGSSGIHI
YIPMGSQYSFEQVKNFGHLLMQQVQKALPEITTLERSLQKRDKGKIYLDYLQNRRGQTLA
SAYSLRPKNGAPISMPLEWSEVKSGLKPTDWNIENALSRIEKKGDLFLPTLKKGIDMLKA
LDNLQA
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgtctctaaaagaatacaacaaaaagcgcgacttcaaacaaacctccgaacctgcagga
attcctgaaaactcgggcgagaaacttcgttttgtggttcagagacacgctgcatcgcat
ctgcattacgattttcgtctggaaatggacggcgtgctaaaaagttgggcgattccgaaa
ggtccttcgcttaatccgaaggacaaacgtttggcgatgatggttgaagaccaccctttt
tcctaccgcacttttgaaggcacgattccgaaaggaaattacggagcaggcgaagttgaa
atttgggacgaaggctggtatgaacctttgaataaaataaagggaaaaacagatgatttg
gtaatgcgcgctgaactgcacaaagaaagtttgaaattcgtaatgcacggcaaaaaactt
cagggtgaatttgctttggtgaaaattaaaaattctgatgatgggaagtcgtggctgctc
atcaaacacaaagatgattttgccaccgatttttacaatgccgaagaaaacacttccgaa
aattcaaaagttacagcagctttaaaaaaaaaatctgaaaaggacgtctccgaaaataca
gcaagatcctacaaaaactacgcacctgccctttccaaagaaaagaaactgaaaaaattt
atcgagccgatgctggcgaaaccttcagacaataaacctttcgacagcaaagactgggcg
tttgaaataaaatgggatggttatcgcgcaattgcagatttgcgcgacggcattcaactc
tactcgagaaacggattggacttttcagcaaaatttaagaaaatcgtcaatcaactcggt
ttgcagcagcacgaaatggttttggatggcgaattggttgcctatgacaacatgggaaaa
ccgaattttcaatggctgcaaaatattggtgaaaaaccaaataccccaataatttttcag
gtttttgatttattgtttttgaatggtcattcaacccgaagtttaacgtatctcgaacgg
aaggaactgctgaaagatgctttaaaagaaaccgaaaacatcaaattctgtgatcatatt
ttggaaaaaggaaaagaatttttccgacttgctgaacagatgggactcgagggaattatc
gccaaaaaaaccgaaagcacttacagcgacggcatccgttcatctgaatggttaaaaata
aaaacacagcaaaccgacgaagtcatcatctgcggatttaccgaacctaaaggatcaaga
aaacactttggctccttaattttagggaattatattgatggtgaactgacattttcagga
cacatcggaacaggattttcagacaaaactttaaaggaactttacggtgtaatgcatcct
ttaattgtagaaaaatcacctttcaaaacgttgccgaaaaccaacggaaaagctacttgg
ttaaaacccgaactgattgcagaaataaaatattccgaaaaaaccaaagacggaattttc
aggcatcccgttttccttcatttaagggaagacaaggaagtttccgatttaaaggaagac
cagcaaacacccgaacaaccaatggaaaaaaagtcaaccaaacctgtgaaaaccgccgta
accacacgagaaaacgaggccaaaaccaaaattggaaaacaggaagtgaaactcacgaat
cagaataaaatttatttcccaaaagacaatgtttccaaaggtgatgttgtggcgtattat
cagagcgttgccgaatttattctaccgcatctcaaaaaccgcgcacagtctttaaaccgc
tttccgaacgggattgacggaatgagtttctaccaaaaagatgctgccgacgaaactccc
gactggattgaaacccacaaaatctactccgacagcaacgataaatacatcaattacatc
atctgcaacgatgcggcgacacttgcctacctgaacaatctcggctgtatcgaaatgaac
gtgtggacaagcagaatcgacaatattgaaaatcccgattatttagctcttgatctagac
ccttccgataacaatacttttgaagacgttatcgccaccgccaaagaagtaaaaaaagtg
cttgacaaagccaaaattgagggctatcccaaaacttccggcagttcaggaatccacatt
tatattccgatgggaagccagtattcttttgaacaggttaaaaatttcggtcatctcctg
atgcagcaagttcagaaagcacttcccgaaattaccactttggaacgcagtcttcagaag
cgtgataaaggcaaaatttatctagattatctacaaaaccgccgcggacaaaccttggcg
agcgcctacagtttaagaccgaaaaacggtgcaccaatttcaatgccattggaatggagc
gaagtgaaatcaggcctaaaaccaaccgattggaatatcgaaaatgcactttcaagaatc
gagaaaaaaggcgatttgtttttgccaactctgaaaaaaggaatcgacatgctgaaagcg
ctcgacaaccttcaagcataa
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