| Entry |
|
|---|
| Symbol |
rpoC
|
|---|
| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
|
|---|
| KO |
|
|---|
| Organism |
csup Chryseobacterium suipulveris
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:csup00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MTP09_12165 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:csup03021]
MTP09_12165 (rpoC)
03400 DNA repair and recombination proteins [BR:csup03400]
MTP09_12165 (rpoC)
Enzymes [BR:csup01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MTP09_12165 (rpoC)
Transcription machinery [BR:csup03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MTP09_12165 (rpoC)
DNA repair and recombination proteins [BR:csup03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MTP09_12165 (rpoC)
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
complement(2591942..2596207)
|
|---|
| AA seq |
1421 aa
MSNKNKTSNFSKITIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPVAHIWYFRSLPNKIGYL
LGLPSKKLDMIIYYERYVVIQPGIAKKADGSDFEDMEFLTEEEYLDILDTLPAENQYLDD
SDPNKFVAKMGAEAVEELLRRIDLDALSFDLRHKAHNESSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEAYSTDDYKVK
GEGLAFYSPEEAEIAYAEGKVSLNAKVRCKLPVKENGELVIRLIETTVGRILFNQIVPKE
VGFVNELLTKKSLRNVIGRILAETDFPTTVKFLDDMKNLGYSNAFKGGLSFSLGDIVIPE
EKKKMIAQAVENVDEIKANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPIVANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITEDDCGTLRGTEITPLKKNDEIVE
KISERILGRVSLHNIYHPETDEVILEADQLIDEAIAKQIEEAGIEVVEVRSPLTCEAKKG
ICAKCYGRNLATGKPIHIGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNISENPSIVAR
RDGIVEMDEIRTVISENEEGKKATILVSRSTEFRLVADNAARTPLMVANVPYGSEIFVKS
GDKVSKGDMIAKWDPYNAVIIAETSGKVEYEDIIQGTSYQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDAKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGEISKYLVKLSNQILVQEN
DFVRAGAPLSDGSITPDDILKIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVEIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVTEAGDSKEFKPGQMITARELRDE
NSKLKREDLQLVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSGK
VDYLGGLKENVIVGHRIPAGTGLKDYQNIIVGSKKEFEDIN |
|---|
| NT seq |
4266 nt +upstreamnt +downstreamnt
atgtcaaacaaaaataaaacaagtaatttcagtaaaattacaatcggtcttgcttctccc
gaatccattcttcaggaatcaagaggagaggttctaaagcccgaaaccatcaactacaga
acgcacaaaccggagcgtgacggacttttctgcgagaaaatcttcggtcccgtgaaagat
tatgagtgtgcctgtggaaaatacaagcgaatccgttacaaaggaatcgtttgcgaccgt
tgtggagtggaggttaccgagaaaaaagtgcgtcgtgaaagaatcgggcacatcaatttg
gtggttcctgtagcacatatttggtatttccgttcgctgccgaacaaaatcggttacctt
ctcggattgccttccaagaagttggatatgattatctattacgaaagatatgtcgtaatc
caaccagggatcgctaagaaagccgatggttccgatttcgaggatatggagtttttaaca
gaagaagaatatctggatatcctcgatacgcttcctgctgaaaaccaatatcttgacgat
tccgatccaaacaagttcgttgccaaaatgggagcggaagcagttgaagaattgttgaga
agaatcgacctcgatgcactttctttcgaccttcgtcacaaagcgcacaacgagtcttca
aaacaaagaagaactgaggcgttaaaaagattgaacgttgtagaagcacttcgtggagca
aacaccagaatgatcaaccgtccggaatggatgattatgagagtgctccctgtaattcca
ccagaactgagaccattggttccgttggatggtggacgtttcgcaacttccgaccttaac
gacctttacagaagagtaatcatcagaaacaaccgtttgaagcgacttttggaaatcaaa
gccccggaagtaatccttagaaacgaaaagagaatgttgcaggaatcggtggattcactg
ttcgacaacacgagaaaatcttctgcagtaaaatctgaatcaaacagacctttgaaatca
ctttcggattcactgaaaggtaaacagggtcgtttccgtcaaaaccttttgggtaaaagg
gttgactactctgctcgttcggtaattgttgtaggtccaaaccttcagttgcacgaatgt
ggtattcctaaagatatggcggcagaattgtacaagccattcatcatcagaaaactgatc
gagagaggaattgtaaaaaccgtgaaatctgcgaaaagaatcatcgatagaaaagagcca
gtagtttacgatatccttgaaaacgtgatgaaaggtcaccctgtacttctgaacagagca
cctacgcttcaccgattgggaatccaggcgttccagccgaaaatgatcgaaggtaaggca
atccagcttcacccactcgtaacaacggcattcaacgctgactttgacggtgaccagatg
gcggttcacttaccgttaggaccggaagcaattttggaagctcagcttttgatgctcggt
tcgcaaaacatcttgaaccctgcaaatggttcaccgattaccgtaccttctcaggacatg
gttcttggtctttatttcatgactaaagaagcatactccaccgatgattacaaagtaaaa
ggtgaaggtttggctttctattctccggaagaagcagaaatcgcttacgcagaaggaaaa
gtttccctgaacgcgaaagtaagatgtaaacttcctgtgaaagaaaacggcgaactcgtg
atcagactgatcgaaactacggtcggaagaatcctgttcaaccaaattgttcctaaagaa
gttggcttcgtaaacgaactgttgacgaagaaatcattgagaaacgttatcggtagaatc
cttgcggaaacagatttcccaacaaccgtgaagttcctcgacgatatgaagaaccttgga
tattccaacgcatttaaaggtggactttcattctcattaggagatatcgtaattccggaa
gagaaaaagaaaatgattgcacaggcggttgaaaatgtggacgaaatcaaggcaaactat
aacatgggtctgattacagacaccgagagatacaaccaggtaatcgacgtttggacaaac
accaacgctggtttgaccgagatgattatgagcagaatgaaaaccgaccaaggtggattc
aactctgtgtatatgatgcttgattcaggagcgagaggttctaaggaacagatccgtcag
ttatcgggaatgagaggtttgatggcaaaaccacaaaaagccggttctaccggagcagaa
attatcgaaaacccgattgtggcgaactttaaggaaggtctttccatcttggaatacttc
atctccactcacggtgctcgtaaaggtcttgctgataccgctctgaaaaccgctgatgct
ggttacttgaccagaagattggtggacgttgcacaggatgtaatcattaccgaagacgac
tgtggaacattgagaggaacagaaattactccgcttaagaaaaacgacgaaatcgttgaa
aagatttccgagagaattttgggtagagtttcccttcacaatatttaccacccagaaacc
gacgaggttattctggaagcagaccaactcatcgacgaggcgattgcaaaacagatcgaa
gaagctggaatcgaggtggtagaagttcgttcaccattaacttgtgaggcgaagaaagga
atctgtgcgaaatgttacggtagaaacttggcgacaggaaaaccaatccacattggagaa
gcagtaggagtaatcgctgcgcagtccatcggtgaacctggaactcagctgacgttgaga
actttccaccaaggaggtactgcaggtaatatttcagaaaacccatccatcgttgcaaga
agagacggtatcgttgaaatggacgaaatcagaaccgtaatttctgaaaatgaagaaggt
aagaaagcgaccatcctggtttcccgttctacggaattccgtttggtagccgacaatgca
gcaagaacaccattgatggtggcgaacgttccttacggttccgaaatctttgtgaagtcg
ggcgacaaagtaagcaaaggagatatgatcgcgaaatgggatccatataacgcggtaatc
attgccgaaacttcaggtaaggtagaatacgaggacatcattcaaggtacatcttaccag
ttggagatcgacgagcaaaccggtttcgaagagaaagtaatctctgaatccagaaacaag
aaagccgttcctacgctgaaagttgtagatgcgaaaggagtagagcagaaagcatacaac
cttcctgttggagctcacttgatggttaatgacggcgagaaaatcaaggcaggtaaagtc
ctgatcaagatcccgagaaaatctgcaaaagcaggggatatcacaggtggtttaccgaga
gttaccgaattgttcgaagcaagaaatccatcgaatccggcggtagtaaccgaaatcgac
ggggtagtttcttacggaaaaatcaagagaggtaaccgcgaattgatcgtggaagcgaaa
accggagaaatttctaaatatctcgtgaaactttctaaccagattctggtacaggaaaac
gatttcgtgagagcaggagcaccactttccgacggttccatcactccggacgatatcctt
aaaatcaaaggaccaaccgcagttcaggaatatctggtaaatgaaattcaggaagtgtac
cgacttcagggggtaaaaatagacgacaagcatttcgaaatcatcgttcgacagatgatg
accaaagtagaaattgtggacggtggtgacacccaattccttgaaggagctttggaacac
aaatacgatttccttgaagaaaacaacagagttttcggactgaaagtcgtaaccgaagct
ggtgattccaaagaattcaagccaggtcagatgatcacggcgagagaactgagagatgaa
aactccaaactgaaacgtgaggatttacaactggtggaagttcgcgaagcgcttcctgca
acggcaactcctgttcttcagggaattacgagagccgcgctccaaaccaaatccttcatg
tctgcagcatcgttccaggaaactaccaaagttttgaatgaggcagcggtttcaggaaaa
gttgattatcttggcggtctgaaagaaaacgtaattgtaggacacagaattcctgcagga
accggacttaaagattaccagaacatcatcgtaggttcgaagaaagaattcgaagacatt
aattaa |
|---|
